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1KWP
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (294 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MAPKAP2
Authors
:
W. Meng, L. L. Swenson, M. J. Fitzgibbon, K. Hayakawa, E. Ter Haar, A. E. J. R. Fulghum, J. A. Lippke
Date
:
30 Jan 02 (Deposition) - 18 Sep 02 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (3x)
Keywords
:
Mapkap2, Protein Kinase, Signal Transduction, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Meng, L. L. Swenson, M. J. Fitzgibbon, K. Hayakawa, E. Ter Haar, A. E. Behrens, J. R. Fulghum, J. A. Lippke
Structure Of Mitogen-Activated Protein Kinase-Activated Protein (Mapkap) Kinase 2 Suggests A Bifunctional Switch That Couples Kinase Activation With Nuclear Export
J. Biol. Chem. V. 277 37401 2002
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
1c: MERCURY (II) ION (HGc)
1d: MERCURY (II) ION (HGd)
1e: MERCURY (II) ION (HGe)
1f: MERCURY (II) ION (HGf)
1g: MERCURY (II) ION (HGg)
1h: MERCURY (II) ION (HGh)
1i: MERCURY (II) ION (HGi)
1j: MERCURY (II) ION (HGj)
1k: MERCURY (II) ION (HGk)
1l: MERCURY (II) ION (HGl)
1m: MERCURY (II) ION (HGm)
1n: MERCURY (II) ION (HGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HG
14
Ligand/Ion
MERCURY (II) ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:96 , CYS A:98
BINDING SITE FOR RESIDUE HG A 401
02
AC2
SOFTWARE
CYS A:114 , PRO A:115 , TYR A:176
BINDING SITE FOR RESIDUE HG A 402
03
AC3
SOFTWARE
HIS A:116 , SER A:169 , LEU A:203 , HOH A:465
BINDING SITE FOR RESIDUE HG A 403
04
AC4
SOFTWARE
LEU A:95 , CYS A:133
BINDING SITE FOR RESIDUE HG A 404
05
AC5
SOFTWARE
CYS A:140 , HOH A:458
BINDING SITE FOR RESIDUE HG A 405
06
AC6
SOFTWARE
TYR A:240 , CYS A:244 , MET A:363
BINDING SITE FOR RESIDUE HG A 406
07
AC7
SOFTWARE
TYR A:254 , CYS A:258 , PRO A:287
BINDING SITE FOR RESIDUE HG A 407
08
AC8
SOFTWARE
CYS B:98
BINDING SITE FOR RESIDUE HG B 401
09
AC9
SOFTWARE
CYS B:114 , TYR B:176
BINDING SITE FOR RESIDUE HG B 402
10
BC1
SOFTWARE
HIS B:116 , SER B:169 , ILE B:170 , LEU B:203
BINDING SITE FOR RESIDUE HG B 403
11
BC2
SOFTWARE
LEU B:95 , CYS B:133
BINDING SITE FOR RESIDUE HG B 404
12
BC3
SOFTWARE
ALA B:91 , CYS B:140
BINDING SITE FOR RESIDUE HG B 405
13
BC4
SOFTWARE
TYR B:240 , CYS B:244 , MET B:363
BINDING SITE FOR RESIDUE HG B 406
14
BC5
SOFTWARE
TYR B:254 , LEU B:257 , CYS B:258 , TRP B:291
BINDING SITE FOR RESIDUE HG B 407
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040753 (A173G, chain A/B, )
2: VAR_040754 (A361S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040753
A
173
G
MAPK2_HUMAN
Polymorphism
35671930
A/B
A
173
G
2
UniProt
VAR_040754
A
361
S
MAPK2_HUMAN
Polymorphism
55894011
A/B
A
361
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:70-93,B:70-93)
2: PROTEIN_KINASE_ST (A:182-194,B:182-194)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MAPK2_HUMAN
70-93
2
A:70-93
B:70-93
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MAPK2_HUMAN
182-194
2
A:182-194
B:182-194
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.1b (A:46-93 | B:44-93)
Exon 1.2 (A:94-140 | B:94-140)
Exon 1.3b (A:140-162 | B:140-162)
Exon 1.4b (A:162-188 | B:162-188)
Exon 1.5 (A:189-216 | B:189-216)
Exon 1.6 (A:236-256 | B:236-256)
Exon 1.7 (A:256-298 (gaps) | B:256-298 (gaps...)
Exon 1.8b (A:298-326 | B:298-326)
Exon 1.9b (A:327-353 | B:327-353)
Exon 1.9d (A:354-385 | B:354-378)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3b
04: Boundary 1.3b/1.4b
05: Boundary 1.4b/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9b
10: Boundary 1.9b/1.9d
11: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000367103
1b
ENSE00001825387
chr1:
206858382-206858853
472
MAPK2_HUMAN
1-93
93
2
A:46-93
B:44-93
48
50
1.2
ENST00000367103
2
ENSE00001069545
chr1:
206902055-206902194
140
MAPK2_HUMAN
94-140
47
2
A:94-140
B:94-140
47
47
1.3b
ENST00000367103
3b
ENSE00001069547
chr1:
206902380-206902444
65
MAPK2_HUMAN
140-162
23
2
A:140-162
B:140-162
23
23
1.4b
ENST00000367103
4b
ENSE00001069548
chr1:
206902741-206902820
80
MAPK2_HUMAN
162-188
27
2
A:162-188
B:162-188
27
27
1.5
ENST00000367103
5
ENSE00001069551
chr1:
206903317-206903443
127
MAPK2_HUMAN
189-231
43
2
A:189-216
B:189-216
28
28
1.6
ENST00000367103
6
ENSE00001648220
chr1:
206904033-206904108
76
MAPK2_HUMAN
231-256
26
2
A:236-256
B:236-256
21
21
1.7
ENST00000367103
7
ENSE00001069544
chr1:
206904483-206904607
125
MAPK2_HUMAN
256-298
43
2
A:256-298 (gaps)
B:256-298 (gaps)
43
43
1.8b
ENST00000367103
8b
ENSE00001069550
chr1:
206904985-206905070
86
MAPK2_HUMAN
298-326
29
2
A:298-326
B:298-326
29
29
1.9b
ENST00000367103
9b
ENSE00001069552
chr1:
206905184-206905264
81
MAPK2_HUMAN
327-353
27
2
A:327-353
B:327-353
27
27
1.9d
ENST00000367103
9d
ENSE00001443498
chr1:
206905920-206907628
1709
MAPK2_HUMAN
354-400
47
2
A:354-385
B:354-378
32
25
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1kwpa_ (A:)
1b: SCOP_d1kwpb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
MAP kinase activated protein kinase 2, mapkap2
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1kwpa_
A:
1b
d1kwpb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1kwpA01 (A:59-140)
1b: CATH_1kwpB01 (B:59-140)
2a: CATH_1kwpB02 (B:141-365)
2b: CATH_1kwpA02 (A:141-365)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1kwpA01
A:59-140
1b
1kwpB01
B:59-140
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
1kwpB02
B:141-365
2b
1kwpA02
A:141-365
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_1kwpB01 (B:64-325)
1b: PFAM_Pkinase_1kwpB02 (B:64-325)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-1kwpB01
B:64-325
1b
Pkinase-1kwpB02
B:64-325
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Asym.Unit (109 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
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Biol.Unit 3 (294 KB)
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