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Getting 'Exon' information from database.
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Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
HUMAN PROCARBOXYPEPTIDASE B: THREE-DIMENSIONAL STRUCTURE AND IMPLICATIONS FOR THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFI)
Authors
:
P. J. B. Pereira, S. Segura-Martin, C. Ferrer-Orta, J. Vendrell, F. - X. Aviles, M. Coll, F. -X. Gomis-Rueth
Date
:
30 Jan 02 (Deposition) - 05 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Procarboxypeptidase B
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Barbosa Pereira, S. Segura-Martin, B. Oliva, C. Ferrer-Orta, F. X. Aviles, M. Coll, F. X. Gomis-Ruth, J. Vendrell
Human Procarboxypeptidase B: Three-Dimensional Structure And Implications For Thrombin-Activatable Fibrinolysis Inhibitor (Tafi).
J. Mol. Biol. V. 321 537 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:69 , GLU A:72 , ASN A:144 , HIS A:196 , HOH A:1352
BINDING SITE FOR RESIDUE ZN A 400
2
AC2
SOFTWARE
HIS B:69 , GLU B:72 , ASN B:144 , HIS B:196 , HOH B:761
BINDING SITE FOR RESIDUE ZN B 400
3
AC3
SOFTWARE
LEU A:78A , HIS A:133 , GLY A:135 , SER A:136 , TYR A:165 , PRO A:168 , ARG A:276 , HOH A:967 , HOH A:990 , HOH A:1121 , HOH A:1174 , HOH A:1185 , HOH A:1197
BINDING SITE FOR RESIDUE CIT A 900
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048598 (N101N, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048598
D
208
N
CBPB1_HUMAN
Polymorphism
1059502
A/B
N
101
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CARBOXYPEPT_ZN_1 (A:60-82,B:60-82)
2: CARBOXYPEPT_ZN_2 (A:196-206,B:196-206)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYPEPT_ZN_1
PS00132
Zinc carboxypeptidases, zinc-binding region 1 signature.
CBPB1_HUMAN
167-189
2
A:60-82
B:60-82
2
CARBOXYPEPT_ZN_2
PS00133
Zinc carboxypeptidases, zinc-binding region 2 signature.
CBPB1_HUMAN
304-314
2
A:196-206
B:196-206
[
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]
Exons
(11, 22)
Info
All Exons
Exon 1.4a (A:1A-9A | B:1A-9A)
Exon 1.5b (A:9A-34A | B:9A-34A)
Exon 1.6b (A:35A-76A | B:35A-76A)
Exon 1.8c (A:76A-17 | B:76A-17)
Exon 1.8e (A:18-51 | B:18-51)
Exon 1.9b (A:52-85 | B:52-85)
Exon 1.10b (A:86-122 | B:86-122)
Exon 1.11c (A:123-153 | B:123-153)
Exon 1.12 (A:153-219 | B:153-219)
Exon 1.13c (A:220-248 | B:220-248)
Exon 1.14a (A:248-309 | B:248-309)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.4a
02: Boundary 1.4a/1.5b
03: Boundary 1.5b/1.6b
04: Boundary 1.6b/1.8c
05: Boundary 1.8c/1.8e
06: Boundary 1.8e/1.9b
07: Boundary 1.9b/1.10b
08: Boundary 1.10b/1.11c
09: Boundary 1.11c/1.12
10: Boundary 1.12/1.13c
11: Boundary 1.13c/1.14a
12: Boundary 1.14a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000282957
4a
ENSE00001008267
chr3:
148545441-148545681
241
CBPB1_HUMAN
1-24
24
2
A:1A-9A
B:1A-9A
9
9
1.5b
ENST00000282957
5b
ENSE00001008280
chr3:
148545789-148545864
76
CBPB1_HUMAN
24-49
26
2
A:9A-34A
B:9A-34A
26
26
1.6b
ENST00000282957
6b
ENSE00001008270
chr3:
148552285-148552409
125
CBPB1_HUMAN
50-91
42
2
A:35A-76A
B:35A-76A
42
42
1.8c
ENST00000282957
8c
ENSE00001008276
chr3:
148558473-148558572
100
CBPB1_HUMAN
91-124
34
2
A:76A-17
B:76A-17
34
34
1.8e
ENST00000282957
8e
ENSE00001008269
chr3:
148558661-148558762
102
CBPB1_HUMAN
125-158
34
2
A:18-51
B:18-51
34
34
1.9b
ENST00000282957
9b
ENSE00001008275
chr3:
148559610-148559711
102
CBPB1_HUMAN
159-192
34
2
A:52-85
B:52-85
34
34
1.10b
ENST00000282957
10b
ENSE00001008268
chr3:
148562265-148562375
111
CBPB1_HUMAN
193-229
37
2
A:86-122
B:86-122
37
37
1.11c
ENST00000282957
11c
ENSE00001008272
chr3:
148562464-148562554
91
CBPB1_HUMAN
230-260
31
2
A:123-153
B:123-153
31
31
1.12
ENST00000282957
12
ENSE00001008274
chr3:
148563211-148563413
203
CBPB1_HUMAN
260-327
68
2
A:153-219
B:153-219
68
68
1.13c
ENST00000282957
13c
ENSE00001077919
chr3:
148575244-148575328
85
CBPB1_HUMAN
328-356
29
2
A:220-248
B:220-248
29
29
1.14a
ENST00000282957
14a
ENSE00001077921
chr3:
148577602-148577943
342
CBPB1_HUMAN
356-417
62
2
A:248-309
B:248-309
62
62
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1kwma2 (A:1A-95A)
1b: SCOP_d1kwmb2 (B:1A-95A)
2a: SCOP_d1kwma1 (A:4-309)
2b: SCOP_d1kwmb1 (B:4-309)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Protease propeptides/inhibitors
(19)
Family
:
Pancreatic carboxypeptidase, activation domain
(9)
Protein domain
:
Procarboxypeptidase B
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1kwma2
A:1A-95A
1b
d1kwmb2
B:1A-95A
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Pancreatic carboxypeptidases
(77)
Protein domain
:
Carboxypeptidase B
(10)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1kwma1
A:4-309
2b
d1kwmb1
B:4-309
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M14_1kwmB01 (B:18-296)
1b: PFAM_Peptidase_M14_1kwmB02 (B:18-296)
2a: PFAM_Propep_M14_1kwmB03 (B:13A-90A)
2b: PFAM_Propep_M14_1kwmB04 (B:13A-90A)
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(
)
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M14
(33)
Homo sapiens (Human)
(5)
1a
Peptidase_M14-1kwmB01
B:18-296
1b
Peptidase_M14-1kwmB02
B:18-296
Clan
:
no clan defined [family: Propep_M14]
(5)
Family
:
Propep_M14
(5)
Homo sapiens (Human)
(2)
2a
Propep_M14-1kwmB03
B:13A-90A
2b
Propep_M14-1kwmB04
B:13A-90A
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