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1KU8
Asym. Unit
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Asym.Unit (106 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JACALIN
Authors
:
Y. Bourne, C. H. Astoul, V. Zamboni, W. J. Peumans, L. Menu-Bouaouiche, E. J. M. Van Damme, A. Barre, P. Rouge
Date
:
21 Jan 02 (Deposition) - 19 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Lectin, Beta-Prism Fold, Carbohydrate Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, C. H. Astoul, V. Zamboni, W. J. Peumans, L. Menu-Bouaouiche, E. J. Van Damme, A. Barre, P. Rouge
Structural Basis For The Unusual Carbohydrate-Binding Specificity Of Jacalin Towards Galactose And Mannose.
Biochem. J. V. 364 173 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(12, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_LECA_ARTIN_001 (V31I, chain A/C/E/G, )
02: VAR_LECA_ARTIN_002 (L34G, chain A/C/E/G, )
03: VAR_LECA_ARTIN_003 (K45L, chain A/C/E/G, )
04: VAR_LECA_ARTIN_004 (K45T, chain A/C/E/G, )
05: VAR_LECA_ARTIN_005 (M66D, chain A/C/E/G, )
06: VAR_LECA_ARTIN_006 (M66V, chain A/C/E/G, )
07: VAR_LECA_ARTIN_007 (E67M, chain A/C/E/G, )
08: VAR_LECA_ARTIN_008 (T72I, chain A/C/E/G, )
09: VAR_LECA_ARTIN_009 (N74K, chain A/C/E/G, )
10: VAR_LECA_ARTIN_010 (T102D, chain A/C/E/G, )
11: VAR_LECA_ARTIN_011 (I113V, chain A/C/E/G, )
12: VAR_LECA_ARTIN_012 (L131N, chain A/C/E/G, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_LECA_ARTIN_001
*
V
31
I
LECA_ARTIN
---
---
A/C/E/G
V
31
I
02
UniProt
VAR_LECA_ARTIN_002
*
L
34
G
LECA_ARTIN
---
---
A/C/E/G
L
34
G
03
UniProt
VAR_LECA_ARTIN_003
*
K
45
L
LECA_ARTIN
---
---
A/C/E/G
K
45
L
04
UniProt
VAR_LECA_ARTIN_004
*
K
45
T
LECA_ARTIN
---
---
A/C/E/G
K
45
T
05
UniProt
VAR_LECA_ARTIN_005
*
M
66
D
LECA_ARTIN
---
---
A/C/E/G
M
66
D
06
UniProt
VAR_LECA_ARTIN_006
*
M
66
V
LECA_ARTIN
---
---
A/C/E/G
M
66
V
07
UniProt
VAR_LECA_ARTIN_007
*
E
67
M
LECA_ARTIN
---
---
A/C/E/G
E
67
M
08
UniProt
VAR_LECA_ARTIN_008
*
T
72
I
LECA_ARTIN
---
---
A/C/E/G
T
72
I
09
UniProt
VAR_LECA_ARTIN_009
*
N
74
K
LECA_ARTIN
---
---
A/C/E/G
N
74
K
10
UniProt
VAR_LECA_ARTIN_010
*
T
102
D
LECA_ARTIN
---
---
A/C/E/G
T
102
D
11
UniProt
VAR_LECA_ARTIN_011
*
I
113
V
LECA_ARTIN
---
---
A/C/E/G
I
113
V
12
UniProt
VAR_LECA_ARTIN_012
*
L
131
N
LECA_ARTIN
---
---
A/C/E/G
L
131
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-133,C:1-133,E:1-133,G:1-133)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
LECA_ARTIN
1-133
4
A:1-133
C:1-133
E:1-133
G:1-133
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ku8_1 (B:,A:)
1b: SCOP_d1ku8_2 (D:,C:)
1c: SCOP_d1ku8_3 (F:,E:)
1d: SCOP_d1ku8_4 (H:,G:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Jacalin
(12)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(10)
1a
d1ku8.1
B:,A:
1b
d1ku8.2
D:,C:
1c
d1ku8.3
F:,E:
1d
d1ku8.4
H:,G:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ku8A00 (A:1-133)
1b: CATH_1ku8C00 (C:1-133)
1c: CATH_1ku8E00 (E:1-133)
1d: CATH_1ku8G00 (G:1-133)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(3)
1a
1ku8A00
A:1-133
1b
1ku8C00
C:1-133
1c
1ku8E00
E:1-133
1d
1ku8G00
G:1-133
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Jacalin_1ku8G01 (G:1-133)
1b: PFAM_Jacalin_1ku8G02 (G:1-133)
1c: PFAM_Jacalin_1ku8G03 (G:1-133)
1d: PFAM_Jacalin_1ku8G04 (G:1-133)
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Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1ku8G01
G:1-133
1b
Jacalin-1ku8G02
G:1-133
1c
Jacalin-1ku8G03
G:1-133
1d
Jacalin-1ku8G04
G:1-133
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