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1KTZ
Biol. Unit 1
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Asym.Unit (39 KB)
Biol.Unit 1 (68 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HUMAN TGF-BETA TYPE II RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH TGF-BETA3
Authors
:
P. J. Hart, S. Deep, A. B. Taylor, Z. Shu, C. S. Hinck, A. P. Hinck
Date
:
18 Jan 02 (Deposition) - 27 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Cytokine-Receptor Complex, Cytokine/Cytokine Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Hart, S. Deep, A. B. Taylor, Z. Shu, C. S. Hinck, A. P. Hinck
Crystal Structure Of The Human Tbetar2 Ectodomain--Tgf-Beta3 Complex.
Nat. Struct. Biol. V. 9 203 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041414 (C38R, chain B, )
2: VAR_036070 (I50V, chain B, )
3: VAR_TGFR2_HUMAN_CCDS2648_1_01 (I50V, chain B, )
4: VAR_070924 (C109Y, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041414
C
61
R
TGFR2_HUMAN
Unclassified
---
B
C
38
R
2
UniProt
VAR_036070
I
73
V
TGFR2_HUMAN
Unclassified
---
B
I
50
V
3
CancerSNP
VAR_TGFR2_HUMAN_CCDS2648_1_01
*
I
73
V
TGFR2_HUMAN
Disease (Colorectal cancer)
---
B
I
50
V
4
UniProt
VAR_070924
C
409
Y
TGFB3_HUMAN
Disease (RNHF)
---
A
C
109
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TGF_BETA_1 (A:33-48)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TGF_BETA_1
PS00250
TGF-beta family signature.
TGFB3_HUMAN
333-348
2
A:33-48
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ktza_ (A:)
2a: SCOP_d1ktzb_ (B:)
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Protein Domains
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Transforming growth factor (TGF)-beta
(41)
Protein domain
:
TGF-beta3
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1ktza_
A:
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Extracellular domain of cell surface receptors
(39)
Protein domain
:
TGF-beta type II receptor extracellular domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1ktzb_
B:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ktzB00 (B:25-130)
2a: CATH_1ktzA00 (A:13-112)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
1a
1ktzB00
B:25-130
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
2a
1ktzA00
A:13-112
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_TGF_beta_1ktzA01 (A:13-112)
2a: PFAM_ecTbetaR2_1ktzB01 (B:25-130)
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Clans
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Clan
:
Cystine-knot
(56)
Family
:
TGF_beta
(29)
Homo sapiens (Human)
(28)
1a
TGF_beta-1ktzA01
A:13-112
Clan
:
no clan defined [family: ecTbetaR2]
(6)
Family
:
ecTbetaR2
(6)
Homo sapiens (Human)
(5)
2a
ecTbetaR2-1ktzB01
B:25-130
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Asym.Unit (39 KB)
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