PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1KTZ
Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (68 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN TGF-BETA TYPE II RECEPTOR EXTRACELLULAR DOMAIN IN COMPLEX WITH TGF-BETA3
Authors
:
P. J. Hart, S. Deep, A. B. Taylor, Z. Shu, C. S. Hinck, A. P. Hinck
Date
:
18 Jan 02 (Deposition) - 27 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Cytokine-Receptor Complex, Cytokine/Cytokine Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Hart, S. Deep, A. B. Taylor, Z. Shu, C. S. Hinck, A. P. Hinck
Crystal Structure Of The Human Tbetar2 Ectodomain--Tgf-Beta3 Complex.
Nat. Struct. Biol. V. 9 203 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041414 (C38R, chain B, )
2: VAR_036070 (I50V, chain B, )
3: VAR_TGFR2_HUMAN_CCDS2648_1_01 (I50V, chain B, )
4: VAR_070924 (C109Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041414
C
61
R
TGFR2_HUMAN
Unclassified
---
B
C
38
R
2
UniProt
VAR_036070
I
73
V
TGFR2_HUMAN
Unclassified
---
B
I
50
V
3
CancerSNP
VAR_TGFR2_HUMAN_CCDS2648_1_01
*
I
73
V
TGFR2_HUMAN
Disease (Colorectal cancer)
---
B
I
50
V
4
UniProt
VAR_070924
C
409
Y
TGFB3_HUMAN
Disease (RNHF)
---
A
C
109
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TGF_BETA_1 (A:33-48)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TGF_BETA_1
PS00250
TGF-beta family signature.
TGFB3_HUMAN
333-348
1
A:33-48
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.6 (A:13-54)
Exon 1.7 (A:73-112)
Exon 2.3 (B:25-65)
Exon 2.4 (B:65-129)
Exon 2.6b (B:129-130)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/-
4: Boundary 2.1a/2.3
5: Boundary 2.3/2.4
6: Boundary 2.4/2.6b
7: Boundary 2.6b/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000238682
1
ENSE00000808431
chr14:
76448092-76446885
1208
TGFB3_HUMAN
1-118
118
0
-
-
1.2
ENST00000238682
2
ENSE00000808430
chr14:
76438061-76437898
164
TGFB3_HUMAN
118-172
55
0
-
-
1.3
ENST00000238682
3
ENSE00000808429
chr14:
76437598-76437469
130
TGFB3_HUMAN
173-216
44
0
-
-
1.4
ENST00000238682
4
ENSE00000808428
chr14:
76432038-76431931
108
TGFB3_HUMAN
216-252
37
0
-
-
1.5
ENST00000238682
5
ENSE00000808427
chr14:
76429830-76429659
172
TGFB3_HUMAN
252-309
58
0
-
-
1.6
ENST00000238682
6
ENSE00000808426
chr14:
76427419-76427266
154
TGFB3_HUMAN
309-360
52
1
A:13-54
42
1.7
ENST00000238682
7
ENSE00000999517
chr14:
76425688-76424442
1247
TGFB3_HUMAN
361-412
52
1
A:73-112
40
2.1a
ENST00000295754
1a
ENSE00001359542
chr3:
30647994-30648469
476
TGFR2_HUMAN
1-32
32
0
-
-
2.3
ENST00000295754
3
ENSE00001716006
chr3:
30686239-30686407
169
TGFR2_HUMAN
32-88
57
1
B:25-65
41
2.4
ENST00000295754
4
ENSE00001629075
chr3:
30691762-30691952
191
TGFR2_HUMAN
88-152
65
1
B:65-129
65
2.6b
ENST00000295754
6b
ENSE00002174563
chr3:
30713130-30713929
800
TGFR2_HUMAN
152-418
267
1
B:129-130
2
2.7
ENST00000295754
7
ENSE00001734611
chr3:
30715597-30715738
142
TGFR2_HUMAN
419-466
48
0
-
-
2.8
ENST00000295754
8
ENSE00001659270
chr3:
30729876-30730003
128
TGFR2_HUMAN
466-508
43
0
-
-
2.9b
ENST00000295754
9b
ENSE00001848750
chr3:
30732912-30735626
2715
TGFR2_HUMAN
509-567
59
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ktza_ (A:)
2a: SCOP_d1ktzb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Transforming growth factor (TGF)-beta
(41)
Protein domain
:
TGF-beta3
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1ktza_
A:
Fold
:
Snake toxin-like
(152)
Superfamily
:
Snake toxin-like
(152)
Family
:
Extracellular domain of cell surface receptors
(39)
Protein domain
:
TGF-beta type II receptor extracellular domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1ktzb_
B:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ktzB00 (B:25-130)
2a: CATH_1ktzA00 (A:13-112)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
CD59
(129)
Homologous Superfamily
:
CD59
(129)
Human (Homo sapiens)
(26)
1a
1ktzB00
B:25-130
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
2a
1ktzA00
A:13-112
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_TGF_beta_1ktzA01 (A:13-112)
2a: PFAM_ecTbetaR2_1ktzB01 (B:25-130)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cystine-knot
(56)
Family
:
TGF_beta
(29)
Homo sapiens (Human)
(28)
1a
TGF_beta-1ktzA01
A:13-112
Clan
:
no clan defined [family: ecTbetaR2]
(6)
Family
:
ecTbetaR2
(6)
Homo sapiens (Human)
(5)
2a
ecTbetaR2-1ktzB01
B:25-130
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (39 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1KTZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help