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Getting 'Exon' information from database.
1KTL
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (231 KB)
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(1)
Title
:
THE HUMAN NON-CLASSICAL MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-E
Authors
:
M. A. Holmes, R. K. Strong
Date
:
16 Jan 02 (Deposition) - 25 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,P,Q
Biol. Unit 1: A,B,P (1x)
Biol. Unit 2: C,D,Q (1x)
Biol. Unit 3: A,B,C,D,P,Q (2x)
Keywords
:
Hla-E, Mhc, Non-Classical Mhc, Hla, Beta 2 Microglobulin, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. K. Strong, M. A. Holmes, P. Li, L. Braun-Jones, N. Lee, D. E. Geraghty
Hla-E Allelic Variants: Correlating Differential Expression, Peptide Affinities, Crystal Structures And Thermal Stabilities
J. Biol. Chem. V. 278 5082 2003
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:75 , ARG A:79 , ARG A:82 , ARG C:75
BINDING SITE FOR RESIDUE SO4 A 275
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059510 (N77K, chain A/C, )
2: VAR_004395 (G83R, chain A/C, )
3: VAR_016651 (G107G, chain A/C, )
4: VAR_016652 (R157G, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059510
N
98
K
HLAE_HUMAN
Polymorphism
1059510
A/C
N
77
K
2
UniProt
VAR_004395
G
104
R
HLAE_HUMAN
Polymorphism
---
A/C
G
83
R
3
UniProt
VAR_016651
R
128
G
HLAE_HUMAN
Polymorphism
1264457
A/C
G
107
G
4
UniProt
VAR_016652
R
178
G
HLAE_HUMAN
Polymorphism
41562314
A/C
R
157
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,D:78-84,B:78-84,D:78-84,B:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_GORGO
98-104
2
B:78-84
D:78-84
B2MG_HUMAN
98-104
2
B:78-84
D:78-84
B2MG_PANTR
98-104
2
B:78-84
D:78-84
HLAE_HUMAN
278-284
2
A:257-263
C:257-263
[
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]
Exons
(7, 14)
Info
All Exons
Exon 1.1a (B:1-3 | D:1-3)
Exon 1.2a (B:3-96 | D:3-96)
Exon 1.4 (B:96-99 | D:96-99)
Exon 2.1a (A:1-1 | C:1-1)
Exon 2.1d (A:1-91 | C:1-91)
Exon 2.1p (A:91-183 | C:91-183)
Exon 2.1x (A:183-274 | C:183-274)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.4
4: Boundary 1.4/1.5
5: Boundary -/2.1a
6: Boundary 2.1a/2.1d
7: Boundary 2.1d/2.1p
8: Boundary 2.1p/2.1x
9: Boundary 2.1x/2.1ad
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSPTRT00000012956
1a
ENSPTRE00000370636
chr15:
41860468-41860604
137
B2MG_PANTR
1-23
23
2
B:1-3
D:1-3
4
4
1.2a
ENSPTRT00000012956
2a
ENSPTRE00000238527
chr15:
41864413-41864691
279
B2MG_PANTR
23-116
94
2
B:3-96
D:3-96
94
94
1.4
ENSPTRT00000012956
4
ENSPTRE00000238528
chr15:
41865318-41865345
28
B2MG_PANTR
116-119
4
2
B:96-99
D:96-99
4
4
1.5
ENSPTRT00000012956
5
ENSPTRE00000070423
chr15:
41866598-41867140
543
B2MG_PANTR
-
0
0
-
-
2.1a
ENST00000383597
1a
ENSE00001870885
HSCHR6_MHC_QBL:30446762-30446890
129
HLAE_HUMAN
1-22
22
2
A:1-1
C:1-1
1
1
2.1d
ENST00000383597
1d
ENSE00001611849
HSCHR6_MHC_QBL:30447021-30447290
270
HLAE_HUMAN
22-112
91
2
A:1-91
C:1-91
91
91
2.1p
ENST00000383597
1p
ENSE00001745192
HSCHR6_MHC_QBL:30447535-30447810
276
HLAE_HUMAN
112-204
93
2
A:91-183
C:91-183
93
93
2.1x
ENST00000383597
1x
ENSE00001623966
HSCHR6_MHC_QBL:30448432-30448707
276
HLAE_HUMAN
204-296
93
2
A:183-274
C:183-274
92
92
2.1ad
ENST00000383597
1ad
ENSE00001618059
HSCHR6_MHC_QBL:30448832-30448948
117
HLAE_HUMAN
296-335
40
0
-
-
2.1an
ENST00000383597
1an
ENSE00001758462
HSCHR6_MHC_QBL:30449699-30449731
33
HLAE_HUMAN
335-346
12
0
-
-
2.2
ENST00000383597
2
ENSE00001707049
HSCHR6_MHC_QBL:30449836-30449878
43
HLAE_HUMAN
346-358
13
0
-
-
2.3b
ENST00000383597
3b
ENSE00001598949
HSCHR6_MHC_QBL:30450044-30451500
1457
HLAE_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1ktlb_ (B:)
1b: SCOP_d1ktld_ (D:)
2a: SCOP_d1ktla1 (A:182-274)
2b: SCOP_d1ktlc1 (C:182-274)
3a: SCOP_d1ktla2 (A:1-181)
3b: SCOP_d1ktlc2 (C:1-181)
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(
)
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1ktlb_
B:
1b
d1ktld_
D:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1ktla1
A:182-274
2b
d1ktlc1
C:182-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-E [TaxId: 9606]
(8)
3a
d1ktla2
A:1-181
3b
d1ktlc2
C:1-181
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1ktlA01 (A:2-181)
1b: CATH_1ktlC01 (C:2-181)
2a: CATH_1ktlB00 (B:1-99)
2b: CATH_1ktlA02 (A:182-272)
2c: CATH_1ktlC02 (C:182-272)
2d: CATH_1ktlD00 (D:1-99)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1ktlA01
A:2-181
1b
1ktlC01
C:2-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1ktlB00
B:1-99
2b
1ktlA02
A:182-272
2c
1ktlC02
C:182-272
2d
1ktlD00
D:1-99
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_C1_set_1ktlD01 (D:11-92)
1b: PFAM_C1_set_1ktlD02 (D:11-92)
1c: PFAM_C1_set_1ktlC01 (C:186-271)
1d: PFAM_C1_set_1ktlC02 (C:186-271)
2a: PFAM_MHC_I_1ktlC03 (C:1-179)
2b: PFAM_MHC_I_1ktlC04 (C:1-179)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1ktlD01
D:11-92
1b
C1-set-1ktlD02
D:11-92
1c
C1-set-1ktlC01
C:186-271
1d
C1-set-1ktlC02
C:186-271
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-1ktlC03
C:1-179
2b
MHC_I-1ktlC04
C:1-179
[
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Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (231 KB)
Header - Biol.Unit 3
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