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1KTJ
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DER P 2, THE MAJOR HOUSE DUST MITE ALLERGEN
Authors
:
U. Derewenda, J. Li, Z. Derewenda, Z. Dauter, G. A. Mueller, G. S. Rule, D. C. Benjamin
Date
:
16 Jan 02 (Deposition) - 15 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Allergen, Asthma, X-Ray Structure, Immunoglobulin Fold, Hydrophobic Cavity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Derewenda, J. Li, Z. Derewenda, Z. Dauter, G. A. Mueller, G. S. Rule, D. C. Benjamin
The Crystal Structure Of A Major Dust Mite Allergen Der P 2, And Its Biological Implications.
J. Mol. Biol. V. 318 189 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(25, 50)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_ALL2_DERPT_001 (H22A, chain A/B, )
02: VAR_ALL2_DERPT_002 (G23L, chain A/B, )
03: VAR_ALL2_DERPT_003 (C27N, chain A/B, )
04: VAR_ALL2_DERPT_004 (H30S, chain A/B, )
05: VAR_ALL2_DERPT_005 (G32T, chain A/B, )
06: VAR_ALL2_DERPT_006 (A39Y, chain A/B, )
07: VAR_ALL2_DERPT_007 (V40L, chain A/B, )
08: VAR_ALL2_DERPT_008 (N44L, chain A/B, )
09: VAR_ALL2_DERPT_009 (T47S, chain A/B, )
10: VAR_ALL2_DERPT_010 (I58Y, chain A/B, )
11: VAR_ALL2_DERPT_011 (L61C, chain A/B, )
12: VAR_ALL2_DERPT_012 (D64V, chain A/B, )
13: VAR_ALL2_DERPT_013 (C78P, chain A/B, )
14: VAR_ALL2_DERPT_014 (V81T, chain A/B, )
15: VAR_ALL2_DERPT_015 (T91V, chain A/B, )
16: VAR_ALL2_DERPT_016 (V94L, chain A/B, )
17: VAR_ALL2_DERPT_017 (I97N, chain A/B, )
18: VAR_ALL2_DERPT_018 (A98T, chain A/B, )
19: VAR_ALL2_DERPT_019 (P99A, chain A/B, )
20: VAR_ALL2_DERPT_020 (S101A, chain A/B, )
21: VAR_ALL2_DERPT_021 (V110L, chain A/B, )
22: VAR_ALL2_DERPT_022 (M111L, chain A/B, )
23: VAR_ALL2_DERPT_023 (D114N, chain A/B, )
24: VAR_ALL2_DERPT_024 (V116A, chain A/B, )
25: VAR_ALL2_DERPT_025 (I127L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_ALL2_DERPT_001
*
H
39
A
ALL2_DERPT
---
---
A/B
H
22
A
02
UniProt
VAR_ALL2_DERPT_002
*
G
40
L
ALL2_DERPT
---
---
A/B
G
23
L
03
UniProt
VAR_ALL2_DERPT_003
*
C
44
N
ALL2_DERPT
---
---
A/B
C
27
N
04
UniProt
VAR_ALL2_DERPT_004
*
H
47
S
ALL2_DERPT
---
---
A/B
H
30
S
05
UniProt
VAR_ALL2_DERPT_005
*
G
49
T
ALL2_DERPT
---
---
A/B
G
32
T
06
UniProt
VAR_ALL2_DERPT_006
*
A
56
Y
ALL2_DERPT
---
---
A/B
A
39
Y
07
UniProt
VAR_ALL2_DERPT_007
*
V
57
L
ALL2_DERPT
---
---
A/B
V
40
L
08
UniProt
VAR_ALL2_DERPT_008
*
N
61
L
ALL2_DERPT
---
---
A/B
N
44
L
09
UniProt
VAR_ALL2_DERPT_009
*
T
64
S
ALL2_DERPT
---
---
A/B
T
47
S
10
UniProt
VAR_ALL2_DERPT_010
*
I
75
Y
ALL2_DERPT
---
---
A/B
I
58
Y
11
UniProt
VAR_ALL2_DERPT_011
*
L
78
C
ALL2_DERPT
---
---
A/B
L
61
C
12
UniProt
VAR_ALL2_DERPT_012
*
D
81
V
ALL2_DERPT
---
---
A/B
D
64
V
13
UniProt
VAR_ALL2_DERPT_013
*
C
95
P
ALL2_DERPT
---
---
A/B
C
78
P
14
UniProt
VAR_ALL2_DERPT_014
*
V
98
T
ALL2_DERPT
---
---
A/B
V
81
T
15
UniProt
VAR_ALL2_DERPT_015
*
T
108
V
ALL2_DERPT
---
---
A/B
T
91
V
16
UniProt
VAR_ALL2_DERPT_016
*
V
111
L
ALL2_DERPT
---
---
A/B
V
94
L
17
UniProt
VAR_ALL2_DERPT_017
*
I
114
N
ALL2_DERPT
---
---
A/B
I
97
N
18
UniProt
VAR_ALL2_DERPT_018
*
A
115
T
ALL2_DERPT
---
---
A/B
A
98
T
19
UniProt
VAR_ALL2_DERPT_019
*
P
116
A
ALL2_DERPT
---
---
A/B
P
99
A
20
UniProt
VAR_ALL2_DERPT_020
*
S
118
A
ALL2_DERPT
---
---
A/B
S
101
A
21
UniProt
VAR_ALL2_DERPT_021
*
V
127
L
ALL2_DERPT
---
---
A/B
V
110
L
22
UniProt
VAR_ALL2_DERPT_022
*
M
128
L
ALL2_DERPT
---
---
A/B
M
111
L
23
UniProt
VAR_ALL2_DERPT_023
*
D
131
N
ALL2_DERPT
---
---
A/B
D
114
N
24
UniProt
VAR_ALL2_DERPT_024
*
V
133
A
ALL2_DERPT
---
---
A/B
V
116
A
25
UniProt
VAR_ALL2_DERPT_025
*
I
144
L
ALL2_DERPT
---
---
A/B
I
127
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ktja_ (A:)
1b: SCOP_d1ktjb_ (B:)
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)
(
)
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
ML domain
(9)
Protein domain
:
Major mite allergen
(7)
House-dust mite (Dermatophagoides pteronyssinus), Der p 2 [TaxId: 6956]
(2)
1a
d1ktja_
A:
1b
d1ktjb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ktjA00 (A:1-129)
1b: CATH_1ktjB00 (B:1-129)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.770, no name defined]
(9)
European house dust mite (Dermatophagoides pteronyssinus)
(2)
1a
1ktjA00
A:1-129
1b
1ktjB00
B:1-129
[
close CATH info
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_E1_DerP2_DerF2_1ktjB01 (B:3-126)
1b: PFAM_E1_DerP2_DerF2_1ktjB02 (B:3-126)
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Clan
:
no clan defined [family: E1_DerP2_DerF2]
(8)
Family
:
E1_DerP2_DerF2
(8)
Dermatophagoides pteronyssinus (European house dust mite)
(1)
1a
E1_DerP2_DerF2-1ktjB01
B:3-126
1b
E1_DerP2_DerF2-1ktjB02
B:3-126
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Asym.Unit (48 KB)
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