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Getting 'Exon' information from database.
1KTA
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
HUMAN BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE : THREE DIMENSIONAL STRUCTURE OF THE ENZYME IN ITS PYRIDOXAMINE PHOSPHATE FORM.
Authors
:
N. H. Yennawar, M. E. Conway, H. P. Yennawar, G. K. Farber, S. M. Hutson
Date
:
15 Jan 02 (Deposition) - 20 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fold Type Iv, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. H. Yennawar, M. E. Conway, H. P. Yennawar, G. K. Farber, S. M. Hutson
Crystal Structures Of Human Mitochondrial Branched Chain Aminotransferase Reaction Intermediates: Ketimine And Pyridoxamine Phosphate Forms
Biochemistry V. 41 11592 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
2a: GLYCEROL (GOLa)
3a: 3-METHYL-2-OXOBUTANOIC ACID (KIVa)
4a: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPa)
4b: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
7
Ligand/Ion
ACETIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
KIV
1
Ligand/Ion
3-METHYL-2-OXOBUTANOIC ACID
4
PMP
2
Ligand/Ion
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:75 , LYS A:202 , TYR A:207 , PMP A:400 , HOH A:1014 , TYR B:570 , VAL B:655
BINDING SITE FOR RESIDUE KIV B 3001
02
AC2
SOFTWARE
ARG A:99 , ARG A:192 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , ASN A:242 , LEU A:266 , GLY A:268 , VAL A:269 , VAL A:270 , GLY A:312 , THR A:313 , HOH A:1008 , HOH A:1079 , HOH A:1122 , KIV B:3001
BINDING SITE FOR RESIDUE PMP A 400
03
AC3
SOFTWARE
HOH B:2 , HOH B:14 , HOH B:89 , ARG B:599 , ARG B:692 , LYS B:702 , TYR B:707 , GLU B:737 , THR B:740 , MET B:741 , ASN B:742 , LEU B:766 , GLY B:768 , VAL B:769 , VAL B:770 , GLY B:812 , THR B:813
BINDING SITE FOR RESIDUE PMP B 900
04
AC4
SOFTWARE
HOH B:124
BINDING SITE FOR RESIDUE ACY B 1001
05
AC5
SOFTWARE
HOH B:242 , GLU B:840 , LEU B:843
BINDING SITE FOR RESIDUE ACY B 1002
06
AC6
SOFTWARE
ARG A:102 , ASN A:200 , LEU A:261 , PRO A:267
BINDING SITE FOR RESIDUE ACY A 1003
07
AC7
SOFTWARE
LYS B:847 , GLU B:851
BINDING SITE FOR RESIDUE ACY B 1004
08
AC8
SOFTWARE
HOH B:98 , GLY B:696 , GLY B:697 , ASN B:700 , TYR B:701 , GLY B:763
BINDING SITE FOR RESIDUE ACY B 1005
09
AC9
SOFTWARE
ARG A:92 , TRP A:94
BINDING SITE FOR RESIDUE ACY A 1006
10
BC1
SOFTWARE
ARG A:102 , MET A:105 , HOH A:1061
BINDING SITE FOR RESIDUE ACY A 1007
11
BC2
SOFTWARE
ASP B:776 , MET B:777 , THR B:780 , HIS B:859 , TRP B:861
BINDING SITE FOR RESIDUE GOL B 2001
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048234 (R659R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048234
T
186
R
BCAT2_HUMAN
Polymorphism
11548193
A
B
R
159
659
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_4 (A:237-271,B:737-771)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_4
PS00770
Aminotransferases class-IV signature.
BCAT2_HUMAN
264-298
2
A:237-271
B:737-771
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.3 (A:1-6 | B:501-506)
Exon 1.4 (A:7-73 | B:507-573)
Exon 1.5 (A:74-110 | B:574-610)
Exon 1.6 (A:111-150 | B:611-650)
Exon 1.7 (A:151-205 | B:651-705)
Exon 1.8 (A:205-253 | B:705-753)
Exon 1.9 (A:253-281 | B:753-781)
Exon 1.10 (A:282-328 | B:782-828)
Exon 1.11 (A:329-353 | B:829-853)
Exon 1.12 (A:354-365 | B:854-865)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000316273
1a
ENSE00001342922
chr19:
49314301-49314241
61
BCAT2_HUMAN
1-8
8
0
-
-
1.3
ENST00000316273
3
ENSE00001609474
chr19:
49310331-49310257
75
BCAT2_HUMAN
9-33
25
2
A:1-6
B:501-506
6
6
1.4
ENST00000316273
4
ENSE00001707807
chr19:
49309974-49309774
201
BCAT2_HUMAN
34-100
67
2
A:7-73
B:507-573
67
67
1.5
ENST00000316273
5
ENSE00000718215
chr19:
49303554-49303444
111
BCAT2_HUMAN
101-137
37
2
A:74-110
B:574-610
37
37
1.6
ENST00000316273
6
ENSE00000718210
chr19:
49303357-49303238
120
BCAT2_HUMAN
138-177
40
2
A:111-150
B:611-650
40
40
1.7
ENST00000316273
7
ENSE00000718205
chr19:
49303095-49302932
164
BCAT2_HUMAN
178-232
55
2
A:151-205
B:651-705
55
55
1.8
ENST00000316273
8
ENSE00000718200
chr19:
49300590-49300448
143
BCAT2_HUMAN
232-280
49
2
A:205-253
B:705-753
49
49
1.9
ENST00000316273
9
ENSE00000718196
chr19:
49300279-49300194
86
BCAT2_HUMAN
280-308
29
2
A:253-281
B:753-781
29
29
1.10
ENST00000316273
10
ENSE00000853352
chr19:
49299975-49299835
141
BCAT2_HUMAN
309-355
47
2
A:282-328
B:782-828
47
47
1.11
ENST00000316273
11
ENSE00000853351
chr19:
49299759-49299685
75
BCAT2_HUMAN
356-380
25
2
A:329-353
B:829-853
25
25
1.12
ENST00000316273
12
ENSE00001236079
chr19:
49298721-49298322
400
BCAT2_HUMAN
381-392
12
2
A:354-365
B:854-865
12
12
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ktaa_ (A:)
1b: SCOP_d1ktab_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Superfamily
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(46)
Family
:
D-aminoacid aminotransferase-like PLP-dependent enzymes
(33)
Protein domain
:
Branched-chain aminoacid aminotransferase
(15)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(9)
1a
d1ktaa_
A:
1b
d1ktab_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ktaA01 (A:1-174,A:351-365)
1b: CATH_1ktaB01 (B:501-674,B:851-865)
2a: CATH_1ktaA02 (A:175-350)
2b: CATH_1ktaB02 (B:675-850)
View:
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
[code=3.30.470.10, no name defined]
(39)
Human (Homo sapiens)
(15)
1a
1ktaA01
A:1-174,A:351-365
1b
1ktaB01
B:501-674,B:851-865
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 2
(39)
Homologous Superfamily
:
D-amino Acid Aminotransferase, subunit A, domain 2
(39)
Human (Homo sapiens)
(15)
2a
1ktaA02
A:175-350
2b
1ktaB02
B:675-850
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aminotran_4_1ktaB01 (B:591-839)
1b: PFAM_Aminotran_4_1ktaB02 (B:591-839)
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Aminotran_4]
(8)
Family
:
Aminotran_4
(8)
Homo sapiens (Human)
(1)
1a
Aminotran_4-1ktaB01
B:591-839
1b
Aminotran_4-1ktaB02
B:591-839
[
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