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1KSJ
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
COMPLEX OF ARL2 AND PDE DELTA, CRYSTAL FORM 2 (SEMET)
Authors
:
M. Hanzal-Bayer, L. Renault, P. Roversi, A. Wittinghofer, R. C. Hillig
Date
:
13 Jan 02 (Deposition) - 08 May 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Small Gtpase, Small Gtp-Binding Protein, Arf Family, Effector Molecule, Immunoglobuline-Like Fold, Gdi, Signaling Protein- Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hanzal-Bayer, L. Renault, P. Roversi, A. Wittinghofer, R. C. Hilli
The Complex Of Arl2-Gtp And Pde Delta: From Structure To Function
Embo J. V. 21 2095 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(7, 11)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
2b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5a: MAGNESIUM ION (MGa)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
7a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CME
2
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
5
MG
1
Ligand/Ion
MAGNESIUM ION
6
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
7
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:26 , LYS A:29 , THR A:47 , GLY A:69 , GDP A:201 , MG A:205 , HOH A:239 , HOH A:240 , HOH A:245
BINDING SITE FOR RESIDUE PO4 A 202
2
AC2
SOFTWARE
THR A:30 , THR A:47 , GDP A:201 , PO4 A:202 , GTP A:203 , HOH A:239 , HOH A:240
BINDING SITE FOR RESIDUE MG A 205
3
AC3
SOFTWARE
LEU A:24 , VAL A:91 , ASP A:92 , ASP A:95 , MSE A:99 , CYS A:102 , HOH A:247 , HOH A:248
BINDING SITE FOR RESIDUE BME A 236
4
AC4
SOFTWARE
LEU A:24 , ASP A:25 , ASN A:26 , ALA A:27 , GLY A:28 , LYS A:29 , THR A:30 , THR A:31 , ILE A:44 , ASN A:125 , LYS A:126 , ASP A:128 , SER A:158 , ALA A:159 , VAL A:160 , PO4 A:202 , MG A:205 , HOH A:239 , HOH A:240 , HOH A:266 , GLY B:84 , CME B:86
BINDING SITE FOR RESIDUE GDP A 201
5
AC5
SOFTWARE
ASP A:25 , ASN A:26 , ALA A:27 , GLY A:28 , LYS A:29 , THR A:30 , THR A:31 , ILE A:44 , PRO A:46 , THR A:47 , GLY A:69 , ASN A:125 , LYS A:126 , ASP A:128 , LEU A:129 , SER A:158 , ALA A:159 , VAL A:160 , MG A:205 , HOH A:239 , HOH A:240 , HOH A:245 , TYR B:81 , GLY B:84 , CME B:86
BINDING SITE FOR RESIDUE GTP A 203
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.3a (B:2-17)
Exon 1.5b (B:17-47)
Exon 1.6a (B:47-89)
Exon 1.7 (B:89-124 (gaps))
Exon 1.9b (B:124-150)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.5b
3: Boundary 1.5b/1.6a
4: Boundary 1.6a/1.7
5: Boundary 1.7/1.9b
6: Boundary 1.9b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000287600
3a
ENSE00001829481
chr2:
232646019-232645775
245
PDE6D_HUMAN
1-17
17
1
B:2-17
16
1.5b
ENST00000287600
5b
ENSE00001029423
chr2:
232603898-232603810
89
PDE6D_HUMAN
17-47
31
1
B:17-47
31
1.6a
ENST00000287600
6a
ENSE00001029425
chr2:
232602848-232602723
126
PDE6D_HUMAN
47-89
43
1
B:47-89
43
1.7
ENST00000287600
7
ENSE00001029421
chr2:
232602002-232601897
106
PDE6D_HUMAN
89-124
36
1
B:89-124 (gaps)
36
1.9b
ENST00000287600
9b
ENSE00001872609
chr2:
232597743-232597135
609
PDE6D_HUMAN
124-150
27
1
B:124-150
27
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ksjb_ (B:)
2a: SCOP_d1ksja_ (A:)
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Classes
(
)
(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
RhoGDI-like
(34)
Protein domain
:
GMP-PDE delta
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d1ksjb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Mouse (Mus musculus), ARL2 [TaxId: 10090]
(4)
2a
d1ksja_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ksjA00 (A:15-179)
2a: CATH_1ksjB00 (B:2-150)
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)
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1ksjA00
A:15-179
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Coagulation Factor XIII; Chain A, domain 1
(28)
Homologous Superfamily
:
E set domains, Chain B ('Early' Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies)
(3)
House mouse (Mus musculus)
(3)
2a
1ksjB00
B:2-150
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Arf_1ksjA01 (A:15-176)
2a: PFAM_GMP_PDE_delta_1ksjB01 (B:7-150)
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(
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)
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)
Clan
:
P-loop_NTPase
(1112)
Family
:
Arf
(26)
Mus musculus (Mouse)
(3)
1a
Arf-1ksjA01
A:15-176
Clan
:
no clan defined [family: GMP_PDE_delta]
(3)
Family
:
GMP_PDE_delta
(3)
Homo sapiens (Human)
(3)
2a
GMP_PDE_delta-1ksjB01
B:7-150
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]
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Asymmetric Unit 1
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