PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1KPC
Biol. Unit 2
Info
Asym.Unit (80 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
PKCI-1-APO+ZINC
Authors
:
C. D. Lima, M. G. Klein, I. B. Weinstein, W. A. Hendrickson
Date
:
06 Jan 96 (Deposition) - 11 Jul 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Pkci-1, Pkc, Signal Transduction, Zinc Binding Protein, Protein Kinase C Interacting Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Lima, M. G. Klein, I. B. Weinstein, W. A. Hendrickson
Three-Dimensional Structure Of Human Protein Kinase C Interacting Protein 1, A Member Of The Hit Family Of Proteins.
Proc. Natl. Acad. Sci. Usa V. 93 5357 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(2, 2)
Info
All Sites
1: ZNC (UNKNOWN)
2: ZND (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
ZNC
UNKNOWN
HIS C:51 , HIS C:112 , HIS C:114
TRIAD OF HISTIDINES POTENTIALLY INVOLVED IN ZINC COORDINATION.
2
ZND
UNKNOWN
HIS D:51 , HIS D:112 , HIS D:114
TRIAD OF HISTIDINES POTENTIALLY INVOLVED IN ZINC COORDINATION.
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_069212 (R37P, chain C/D, )
2: VAR_069213 (H51R, chain C/D, )
3: VAR_069214 (C84R, chain C/D, )
4: VAR_069215 (G89V, chain C/D, )
5: VAR_069216 (G93D, chain C/D, )
6: VAR_069217 (H112N, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069212
R
37
P
HINT1_HUMAN
Disease (NMAN)
149782619
C/D
R
37
P
2
UniProt
VAR_069213
H
51
R
HINT1_HUMAN
Disease (NMAN)
---
C/D
H
51
R
3
UniProt
VAR_069214
C
84
R
HINT1_HUMAN
Disease (NMAN)
---
C/D
C
84
R
4
UniProt
VAR_069215
G
89
V
HINT1_HUMAN
Disease (NMAN)
---
C/D
G
89
V
5
UniProt
VAR_069216
G
93
D
HINT1_HUMAN
Disease (NMAN)
---
C/D
G
93
D
6
UniProt
VAR_069217
H
112
N
HINT1_HUMAN
Disease (NMAN)
---
C/D
H
112
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HIT_2 (C:18-126,D:18-126)
2: HIT_1 (C:99-117,D:99-117)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIT_2
PS51084
HIT domain profile.
HINT1_HUMAN
18-126
2
-
-
C:18-126
D:18-126
2
HIT_1
PS00892
HIT domain signature.
HINT1_HUMAN
99-117
2
-
-
C:99-117
D:99-117
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1kpca_ (A:)
1b: SCOP_d1kpcb_ (B:)
1c: SCOP_d1kpcc_ (C:)
1d: SCOP_d1kpcd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
HIT-like
(73)
Superfamily
:
HIT-like
(67)
Family
:
HIT (HINT, histidine triad) family of protein kinase-interacting proteins
(38)
Protein domain
:
Protein kinase C inhibitor-1, PKCI-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1kpca_
A:
1b
d1kpcb_
B:
1c
d1kpcc_
C:
1d
d1kpcd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1kpcD00 (D:18-126)
1b: CATH_1kpcA00 (A:16-126)
1c: CATH_1kpcB00 (B:16-126)
1d: CATH_1kpcC00 (C:16-126)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
HIT family, subunit A
(33)
Homologous Superfamily
:
HIT family, subunit A
(27)
Human (Homo sapiens)
(14)
1a
1kpcD00
D:18-126
1b
1kpcA00
A:16-126
1c
1kpcB00
B:16-126
1d
1kpcC00
C:16-126
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HIT_1kpcD01 (D:24-121)
1b: PFAM_HIT_1kpcD02 (D:24-121)
1c: PFAM_HIT_1kpcD03 (D:24-121)
1d: PFAM_HIT_1kpcD04 (D:24-121)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HIT
(23)
Family
:
HIT
(19)
Homo sapiens (Human)
(5)
1a
HIT-1kpcD01
D:24-121
1b
HIT-1kpcD02
D:24-121
1c
HIT-1kpcD03
D:24-121
1d
HIT-1kpcD04
D:24-121
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (80 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1KPC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help