PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1KP8
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL BASIS FOR GROEL-ASSISTED PROTEIN FOLDING FROM THE CRYSTAL STRUCTURE OF (GROEL-KMGATP)14 AT 2.0 A RESOLUTION
Authors
:
J. Wang
Date
:
30 Dec 01 (Deposition) - 25 Mar 03 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Chaperonin, Groel, Assisted Protein Folding, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, D. C. Boisvert
Structural Basis For Groel-Assisted Protein Folding From Th Crystal Structure Of (Groel-Kmgatp)14 At 2. 0 A Resolution
J. Mol. Biol. V. 327 843 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 66)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
1c: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSc)
1d: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSd)
1e: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSe)
1f: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSf)
1g: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSg)
1h: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSh)
1i: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSi)
1j: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSj)
1k: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSk)
1l: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSl)
1m: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSm)
1n: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSn)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
2g: POTASSIUM ION (Kg)
2h: POTASSIUM ION (Kh)
2i: POTASSIUM ION (Ki)
2j: POTASSIUM ION (Kj)
2k: POTASSIUM ION (Kk)
2l: POTASSIUM ION (Kl)
2m: POTASSIUM ION (Km)
2n: POTASSIUM ION (Kn)
2o: POTASSIUM ION (Ko)
2p: POTASSIUM ION (Kp)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
14
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
K
16
Ligand/Ion
POTASSIUM ION
3
MG
14
Ligand/Ion
MAGNESIUM ION
4
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(66, 66)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:36 , LEU A:456 , ASN A:457 , HOH A:1023 , GLU B:518
BINDING SITE FOR RESIDUE SO4 A 4001
02
AC2
SOFTWARE
LYS A:28 , ALA A:449 , ARG A:452 , GLN A:453 , HOH A:2456 , HOH A:2462 , HOH A:2500
BINDING SITE FOR RESIDUE SO4 A 4007
03
AC3
SOFTWARE
ARG A:445 , GLU A:448 , ARG A:452 , HOH A:2019
BINDING SITE FOR RESIDUE SO4 A 4008
04
AC4
SOFTWARE
AGS A:1 , ASP A:87 , HOH A:5432 , HOH A:5433
BINDING SITE FOR RESIDUE MG A 550
05
AC5
SOFTWARE
AGS A:1 , THR A:30 , LYS A:51 , HOH A:5460 , HOH A:5461 , HOH A:5462 , HOH A:5463
BINDING SITE FOR RESIDUE K A 549
06
AC6
SOFTWARE
THR A:30 , LEU A:31 , GLY A:32 , PRO A:33 , GLY A:53 , ASP A:87 , GLY A:88 , THR A:89 , THR A:90 , THR A:91 , GLY A:414 , GLY A:415 , TYR A:478 , ASN A:479 , ALA A:480 , ALA A:481 , ILE A:493 , ASP A:495 , K A:549 , MG A:550 , HOH A:2015 , HOH A:5015 , HOH A:5019 , HOH A:5433 , HOH A:5460 , HOH A:5463
BINDING SITE FOR RESIDUE AGS A 1
07
AC7
SOFTWARE
LYS B:28 , ALA B:449 , GLN B:453 , HOH B:1267 , HOH B:2147 , HOH B:2545 , HOH B:2619 , HOH B:5031
BINDING SITE FOR RESIDUE SO4 B 4009
08
AC8
SOFTWARE
ARG B:445 , GLU B:448 , ARG B:452 , HOH B:1431 , HOH B:2049 , HOH B:2747
BINDING SITE FOR RESIDUE SO4 B 4010
09
AC9
SOFTWARE
AGS B:1 , ASP B:87 , HOH B:5434 , HOH B:5435
BINDING SITE FOR RESIDUE MG B 550
10
BC1
SOFTWARE
AGS B:1 , THR B:30 , LYS B:51 , HOH B:5464 , HOH B:5465 , HOH B:5466 , HOH B:5467
BINDING SITE FOR RESIDUE K B 549
11
BC2
SOFTWARE
THR B:30 , LEU B:31 , GLY B:32 , PRO B:33 , GLY B:53 , ASP B:87 , GLY B:88 , THR B:89 , THR B:90 , THR B:91 , GLY B:414 , GLY B:415 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , K B:549 , MG B:550 , HOH B:2239 , HOH B:5044 , HOH B:5046 , HOH B:5050 , HOH B:5467
BINDING SITE FOR RESIDUE AGS B 1
12
BC3
SOFTWARE
LYS C:28 , ALA C:449 , GLN C:453 , HOH C:1745 , HOH C:1858
BINDING SITE FOR RESIDUE SO4 C 4011
13
BC4
SOFTWARE
ARG C:445 , ARG C:452 , HOH C:2695
BINDING SITE FOR RESIDUE SO4 C 4012
14
BC5
SOFTWARE
AGS C:1 , ASP C:87 , HOH C:5436 , HOH C:5437
BINDING SITE FOR RESIDUE MG C 550
15
BC6
SOFTWARE
AGS C:1 , THR C:30 , LYS C:51 , HOH C:5468 , HOH C:5469 , HOH C:5470 , HOH C:5471
BINDING SITE FOR RESIDUE K C 549
16
BC7
SOFTWARE
THR C:30 , LEU C:31 , GLY C:32 , PRO C:33 , GLY C:53 , ASP C:87 , GLY C:88 , THR C:89 , THR C:90 , THR C:91 , GLY C:414 , GLY C:415 , TYR C:478 , ASN C:479 , ALA C:480 , ALA C:481 , ILE C:493 , ASP C:495 , K C:549 , MG C:550 , HOH C:5075 , HOH C:5077 , HOH C:5081 , HOH C:5436 , HOH C:5437 , HOH C:5468 , HOH C:5471
BINDING SITE FOR RESIDUE AGS C 1
17
BC8
SOFTWARE
LYS D:132 , ALA D:133 , SER D:135
BINDING SITE FOR RESIDUE K D 1
18
BC9
SOFTWARE
ASP D:87 , AGS D:551 , HOH D:5438 , HOH D:5439
BINDING SITE FOR RESIDUE MG D 550
19
CC1
SOFTWARE
THR D:30 , LYS D:51 , AGS D:551 , HOH D:5472 , HOH D:5473 , HOH D:5474 , HOH D:5475
BINDING SITE FOR RESIDUE K D 549
20
CC2
SOFTWARE
THR D:30 , LEU D:31 , GLY D:32 , PRO D:33 , GLY D:53 , ASP D:87 , GLY D:88 , THR D:89 , THR D:90 , THR D:91 , GLY D:414 , GLY D:415 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , K D:549 , MG D:550 , HOH D:1693 , HOH D:2892 , HOH D:5108 , HOH D:5112 , HOH D:5439 , HOH D:5472 , HOH D:5475
BINDING SITE FOR RESIDUE AGS D 551
21
CC3
SOFTWARE
ALA B:133 , HOH B:1817 , LYS E:132 , ALA E:133 , SER E:135 , HOH E:1900
BINDING SITE FOR RESIDUE K E 549
22
CC4
SOFTWARE
LYS E:28 , ALA E:449 , ARG E:452 , GLN E:453 , HOH E:1569 , HOH E:1667 , HOH E:1955 , HOH E:2455
BINDING SITE FOR RESIDUE SO4 E 4005
23
CC5
SOFTWARE
ARG E:445 , GLU E:448 , ARG E:452 , HOH E:1725 , HOH E:1730 , HOH E:1983 , HOH E:2006
BINDING SITE FOR RESIDUE SO4 E 4006
24
CC6
SOFTWARE
AGS E:1 , ASP E:87 , HOH E:5440 , HOH E:5441
BINDING SITE FOR RESIDUE MG E 550
25
CC7
SOFTWARE
AGS E:1 , THR E:30 , LYS E:51 , HOH E:5476 , HOH E:5477 , HOH E:5478 , HOH E:5479
BINDING SITE FOR RESIDUE K E 4007
26
CC8
SOFTWARE
THR E:30 , LEU E:31 , GLY E:32 , PRO E:33 , GLY E:53 , ASP E:87 , GLY E:88 , THR E:89 , THR E:90 , THR E:91 , GLY E:414 , GLY E:415 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , MG E:550 , K E:4007 , HOH E:5139 , HOH E:5143 , HOH E:5440 , HOH E:5441 , HOH E:5476 , HOH E:5479
BINDING SITE FOR RESIDUE AGS E 1
27
CC9
SOFTWARE
ARG E:36 , HOH E:1086 , VAL F:107 , PRO F:113 , GLU F:518 , HOH F:1057 , HOH F:1857 , HOH F:2095
BINDING SITE FOR RESIDUE SO4 F 4004
28
DC1
SOFTWARE
AGS F:1 , ASP F:87 , HOH F:2845 , HOH F:5442 , HOH F:5443
BINDING SITE FOR RESIDUE MG F 550
29
DC2
SOFTWARE
AGS F:1 , THR F:30 , LYS F:51 , HOH F:5480 , HOH F:5481 , HOH F:5482 , HOH F:5483
BINDING SITE FOR RESIDUE K F 549
30
DC3
SOFTWARE
THR F:30 , LEU F:31 , GLY F:32 , PRO F:33 , GLY F:53 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , K F:549 , MG F:550 , HOH F:1546 , HOH F:2017 , HOH F:2845 , HOH F:5170 , HOH F:5174 , HOH F:5480 , HOH F:5483
BINDING SITE FOR RESIDUE AGS F 1
31
DC4
SOFTWARE
GLU G:102 , ALA G:106 , ARG G:445 , HOH G:2088 , HOH G:2150 , ALA N:109
BINDING SITE FOR RESIDUE SO4 G 4002
32
DC5
SOFTWARE
AGS G:1 , ASP G:87 , HOH G:5444 , HOH G:5445
BINDING SITE FOR RESIDUE MG G 550
33
DC6
SOFTWARE
AGS G:1 , THR G:30 , LYS G:51 , HOH G:5484 , HOH G:5485 , HOH G:5486 , HOH G:5487
BINDING SITE FOR RESIDUE K G 549
34
DC7
SOFTWARE
THR G:30 , LEU G:31 , GLY G:32 , PRO G:33 , GLY G:53 , ASP G:87 , GLY G:88 , THR G:89 , THR G:90 , THR G:91 , GLY G:414 , GLY G:415 , TYR G:478 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , K G:549 , MG G:550 , HOH G:1743 , HOH G:5199 , HOH G:5201 , HOH G:5205 , HOH G:5484 , HOH G:5487
BINDING SITE FOR RESIDUE AGS G 1
35
DC8
SOFTWARE
LYS H:28 , ALA H:449 , ARG H:452 , GLN H:453 , HOH H:1456
BINDING SITE FOR RESIDUE SO4 H 4017
36
DC9
SOFTWARE
ARG H:445 , GLU H:448 , ARG H:452 , HOH H:1456 , HOH H:2039 , HOH H:2314
BINDING SITE FOR RESIDUE SO4 H 4018
37
EC1
SOFTWARE
AGS H:1 , ASP H:87 , HOH H:5446 , HOH H:5447
BINDING SITE FOR RESIDUE MG H 550
38
EC2
SOFTWARE
AGS H:1 , THR H:30 , LYS H:51 , HOH H:5488 , HOH H:5489 , HOH H:5490 , HOH H:5491
BINDING SITE FOR RESIDUE K H 549
39
EC3
SOFTWARE
THR H:30 , LEU H:31 , GLY H:32 , PRO H:33 , GLY H:53 , ASP H:87 , GLY H:88 , THR H:89 , THR H:90 , THR H:91 , GLY H:414 , GLY H:415 , TYR H:478 , ASN H:479 , ALA H:480 , ALA H:481 , ILE H:493 , ASP H:495 , K H:549 , MG H:550 , HOH H:2994 , HOH H:5232 , HOH H:5236 , HOH H:5446 , HOH H:5447 , HOH H:5488 , HOH H:5491
BINDING SITE FOR RESIDUE AGS H 1
40
EC4
SOFTWARE
AGS I:1 , ASP I:87 , HOH I:5448 , HOH I:5449
BINDING SITE FOR RESIDUE MG I 550
41
EC5
SOFTWARE
AGS I:1 , THR I:30 , LYS I:51 , HOH I:5492 , HOH I:5493 , HOH I:5494 , HOH I:5495
BINDING SITE FOR RESIDUE K I 549
42
EC6
SOFTWARE
THR I:30 , LEU I:31 , GLY I:32 , PRO I:33 , GLY I:53 , ASP I:87 , GLY I:88 , THR I:89 , THR I:90 , THR I:91 , GLY I:414 , GLY I:415 , TYR I:478 , ASN I:479 , ALA I:480 , ALA I:481 , ILE I:493 , ASP I:495 , K I:549 , MG I:550 , HOH I:2135 , HOH I:5263 , HOH I:5267 , HOH I:5269 , HOH I:5448 , HOH I:5449 , HOH I:5492 , HOH I:5495
BINDING SITE FOR RESIDUE AGS I 1
43
EC7
SOFTWARE
LYS J:28 , ALA J:449 , GLN J:453 , HOH J:1848 , HOH J:2444
BINDING SITE FOR RESIDUE SO4 J 4019
44
EC8
SOFTWARE
ARG J:445 , GLU J:448 , ARG J:452 , HOH J:1749
BINDING SITE FOR RESIDUE SO4 J 4020
45
EC9
SOFTWARE
AGS J:1 , ASP J:87 , HOH J:5450 , HOH J:5451
BINDING SITE FOR RESIDUE MG J 550
46
FC1
SOFTWARE
AGS J:1 , THR J:30 , LYS J:51 , HOH J:5496 , HOH J:5497 , HOH J:5498 , HOH J:5499
BINDING SITE FOR RESIDUE K J 549
47
FC2
SOFTWARE
THR J:30 , LEU J:31 , GLY J:32 , PRO J:33 , GLY J:53 , ASP J:87 , GLY J:88 , THR J:89 , THR J:90 , THR J:91 , GLY J:414 , GLY J:415 , TYR J:478 , ASN J:479 , ALA J:480 , ALA J:481 , ASP J:495 , K J:549 , MG J:550 , HOH J:2067 , HOH J:2699 , HOH J:5293 , HOH J:5297 , HOH J:5450 , HOH J:5451 , HOH J:5496 , HOH J:5499
BINDING SITE FOR RESIDUE AGS J 1
48
FC3
SOFTWARE
LYS K:28 , ALA K:449 , ARG K:452 , GLN K:453 , HOH K:1709
BINDING SITE FOR RESIDUE SO4 K 4021
49
FC4
SOFTWARE
ARG K:445 , ARG K:452 , HOH K:1709 , HOH K:1984
BINDING SITE FOR RESIDUE SO4 K 4022
50
FC5
SOFTWARE
AGS K:1 , ASP K:87 , HOH K:5452 , HOH K:5453
BINDING SITE FOR RESIDUE MG K 550
51
FC6
SOFTWARE
AGS K:1 , THR K:30 , LYS K:51 , HOH K:5500 , HOH K:5501 , HOH K:5502 , HOH K:5503
BINDING SITE FOR RESIDUE K K 549
52
FC7
SOFTWARE
THR K:30 , LEU K:31 , GLY K:32 , PRO K:33 , GLY K:53 , ASP K:87 , GLY K:88 , THR K:89 , THR K:90 , THR K:91 , GLY K:414 , GLY K:415 , TYR K:478 , ASN K:479 , ALA K:480 , ALA K:481 , ILE K:493 , ASP K:495 , K K:549 , MG K:550 , HOH K:5321 , HOH K:5323 , HOH K:5327 , HOH K:5453
BINDING SITE FOR RESIDUE AGS K 1
53
FC8
SOFTWARE
ARG K:18 , HOH K:1278 , LYS L:4 , ASP L:5 , VAL L:6
BINDING SITE FOR RESIDUE SO4 L 4003
54
FC9
SOFTWARE
AGS L:1 , ASP L:87 , HOH L:5454 , HOH L:5455
BINDING SITE FOR RESIDUE MG L 550
55
GC1
SOFTWARE
AGS L:1 , THR L:30 , LYS L:51 , HOH L:5504 , HOH L:5505 , HOH L:5506 , HOH L:5507
BINDING SITE FOR RESIDUE K L 549
56
GC2
SOFTWARE
THR L:30 , LEU L:31 , GLY L:32 , PRO L:33 , GLY L:53 , ASP L:87 , GLY L:88 , THR L:89 , THR L:90 , THR L:91 , GLY L:414 , GLY L:415 , TYR L:478 , ASN L:479 , ALA L:480 , ALA L:481 , ILE L:493 , ASP L:495 , K L:549 , MG L:550 , HOH L:1603 , HOH L:5354 , HOH L:5358 , HOH L:5504 , HOH L:5507
BINDING SITE FOR RESIDUE AGS L 1
57
GC3
SOFTWARE
LYS M:28 , ALA M:449 , ARG M:452 , GLN M:453 , HOH M:3019
BINDING SITE FOR RESIDUE SO4 M 4013
58
GC4
SOFTWARE
ARG M:445 , GLU M:448 , ARG M:452 , HOH M:2595 , HOH M:3019
BINDING SITE FOR RESIDUE SO4 M 4014
59
GC5
SOFTWARE
AGS M:1 , ASP M:87 , HOH M:5456 , HOH M:5457
BINDING SITE FOR RESIDUE MG M 550
60
GC6
SOFTWARE
AGS M:1 , THR M:30 , LYS M:51 , HOH M:5508 , HOH M:5509 , HOH M:5510 , HOH M:5511
BINDING SITE FOR RESIDUE K M 549
61
GC7
SOFTWARE
THR M:30 , LEU M:31 , GLY M:32 , PRO M:33 , GLY M:53 , ASP M:87 , GLY M:88 , THR M:89 , THR M:90 , THR M:91 , GLY M:414 , GLY M:415 , TYR M:478 , ASN M:479 , ALA M:480 , ALA M:481 , ILE M:493 , ASP M:495 , K M:549 , MG M:550 , HOH M:2164 , HOH M:5383 , HOH M:5385 , HOH M:5389 , HOH M:5457 , HOH M:5508 , HOH M:5511
BINDING SITE FOR RESIDUE AGS M 1
62
GC8
SOFTWARE
LYS N:28 , ARG N:452 , GLN N:453
BINDING SITE FOR RESIDUE SO4 N 4015
63
GC9
SOFTWARE
ARG N:445 , GLU N:448 , ARG N:452
BINDING SITE FOR RESIDUE SO4 N 4016
64
HC1
SOFTWARE
AGS N:1 , ASP N:87 , HOH N:5458 , HOH N:5459
BINDING SITE FOR RESIDUE MG N 550
65
HC2
SOFTWARE
AGS N:1 , THR N:30 , LYS N:51 , HOH N:5512 , HOH N:5513 , HOH N:5514 , HOH N:5515
BINDING SITE FOR RESIDUE K N 549
66
HC3
SOFTWARE
THR N:30 , LEU N:31 , GLY N:32 , PRO N:33 , GLY N:53 , ASP N:87 , GLY N:88 , THR N:89 , THR N:90 , THR N:91 , GLY N:414 , GLY N:415 , TYR N:478 , ASN N:479 , ALA N:480 , ALA N:481 , ILE N:493 , ASP N:495 , K N:549 , MG N:550 , HOH N:5416 , HOH N:5420 , HOH N:5515
BINDING SITE FOR RESIDUE AGS N 1
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_ECOLI
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 42)
Info
All SCOP Domains
1a: SCOP_d1kp8a1 (A:2-136,A:410-526)
1b: SCOP_d1kp8b1 (B:2-136,B:410-526)
1c: SCOP_d1kp8k1 (K:2-136,K:410-526)
1d: SCOP_d1kp8l1 (L:2-136,L:410-526)
1e: SCOP_d1kp8m1 (M:2-136,M:410-526)
1f: SCOP_d1kp8n1 (N:2-136,N:410-526)
1g: SCOP_d1kp8c1 (C:2-136,C:410-526)
1h: SCOP_d1kp8d1 (D:2-136,D:410-526)
1i: SCOP_d1kp8e1 (E:2-136,E:410-526)
1j: SCOP_d1kp8f1 (F:2-136,F:410-526)
1k: SCOP_d1kp8g1 (G:2-136,G:410-526)
1l: SCOP_d1kp8h1 (H:2-136,H:410-526)
1m: SCOP_d1kp8i1 (I:2-136,I:410-526)
1n: SCOP_d1kp8j1 (J:2-136,J:410-526)
2a: SCOP_d1kp8a3 (A:137-190,A:367-409)
2b: SCOP_d1kp8b3 (B:137-190,B:367-409)
2c: SCOP_d1kp8k3 (K:137-190,K:367-409)
2d: SCOP_d1kp8l3 (L:137-190,L:367-409)
2e: SCOP_d1kp8m3 (M:137-190,M:367-409)
2f: SCOP_d1kp8n3 (N:137-190,N:367-409)
2g: SCOP_d1kp8c3 (C:137-190,C:367-409)
2h: SCOP_d1kp8d3 (D:137-190,D:367-409)
2i: SCOP_d1kp8e3 (E:137-190,E:367-409)
2j: SCOP_d1kp8f3 (F:137-190,F:367-409)
2k: SCOP_d1kp8g3 (G:137-190,G:367-409)
2l: SCOP_d1kp8h3 (H:137-190,H:367-409)
2m: SCOP_d1kp8i3 (I:137-190,I:367-409)
2n: SCOP_d1kp8j3 (J:137-190,J:367-409)
3a: SCOP_d1kp8a2 (A:191-366)
3b: SCOP_d1kp8b2 (B:191-366)
3c: SCOP_d1kp8c2 (C:191-366)
3d: SCOP_d1kp8d2 (D:191-366)
3e: SCOP_d1kp8e2 (E:191-366)
3f: SCOP_d1kp8f2 (F:191-366)
3g: SCOP_d1kp8g2 (G:191-366)
3h: SCOP_d1kp8h2 (H:191-366)
3i: SCOP_d1kp8i2 (I:191-366)
3j: SCOP_d1kp8j2 (J:191-366)
3k: SCOP_d1kp8k2 (K:191-366)
3l: SCOP_d1kp8l2 (L:191-366)
3m: SCOP_d1kp8m2 (M:191-366)
3n: SCOP_d1kp8n2 (N:191-366)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GroEL equatorial domain-like
(23)
Superfamily
:
GroEL equatorial domain-like
(23)
Family
:
GroEL chaperone, ATPase domain
(15)
Protein domain
:
GroEL, E domain
(15)
Escherichia coli [TaxId: 562]
(11)
1a
d1kp8a1
A:2-136,A:410-526
1b
d1kp8b1
B:2-136,B:410-526
1c
d1kp8k1
K:2-136,K:410-526
1d
d1kp8l1
L:2-136,L:410-526
1e
d1kp8m1
M:2-136,M:410-526
1f
d1kp8n1
N:2-136,N:410-526
1g
d1kp8c1
C:2-136,C:410-526
1h
d1kp8d1
D:2-136,D:410-526
1i
d1kp8e1
E:2-136,E:410-526
1j
d1kp8f1
F:2-136,F:410-526
1k
d1kp8g1
G:2-136,G:410-526
1l
d1kp8h1
H:2-136,H:410-526
1m
d1kp8i1
I:2-136,I:410-526
1n
d1kp8j1
J:2-136,J:410-526
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GroEL-intermediate domain like
(23)
Superfamily
:
GroEL-intermediate domain like
(23)
Family
:
GroEL-like chaperone, intermediate domain
(15)
Protein domain
:
GroEL, I domain
(15)
Escherichia coli [TaxId: 562]
(11)
2a
d1kp8a3
A:137-190,A:367-409
2b
d1kp8b3
B:137-190,B:367-409
2c
d1kp8k3
K:137-190,K:367-409
2d
d1kp8l3
L:137-190,L:367-409
2e
d1kp8m3
M:137-190,M:367-409
2f
d1kp8n3
N:137-190,N:367-409
2g
d1kp8c3
C:137-190,C:367-409
2h
d1kp8d3
D:137-190,D:367-409
2i
d1kp8e3
E:137-190,E:367-409
2j
d1kp8f3
F:137-190,F:367-409
2k
d1kp8g3
G:137-190,G:367-409
2l
d1kp8h3
H:137-190,H:367-409
2m
d1kp8i3
I:137-190,I:367-409
2n
d1kp8j3
J:137-190,J:367-409
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
GroEL apical domain-like
(41)
Family
:
GroEL-like chaperone, apical domain
(27)
Protein domain
:
GroEL, A domain
(23)
Escherichia coli [TaxId: 562]
(18)
3a
d1kp8a2
A:191-366
3b
d1kp8b2
B:191-366
3c
d1kp8c2
C:191-366
3d
d1kp8d2
D:191-366
3e
d1kp8e2
E:191-366
3f
d1kp8f2
F:191-366
3g
d1kp8g2
G:191-366
3h
d1kp8h2
H:191-366
3i
d1kp8i2
I:191-366
3j
d1kp8j2
J:191-366
3k
d1kp8k2
K:191-366
3l
d1kp8l2
L:191-366
3m
d1kp8m2
M:191-366
3n
d1kp8n2
N:191-366
[
close SCOP info
]
CATH Domains
(3, 42)
Info
all CATH domains
1a: CATH_1kp8A02 (A:136-191,A:373-410)
1b: CATH_1kp8B02 (B:136-191,B:373-410)
1c: CATH_1kp8K02 (K:136-191,K:373-410)
1d: CATH_1kp8L02 (L:136-191,L:373-410)
1e: CATH_1kp8M02 (M:136-191,M:373-410)
1f: CATH_1kp8N02 (N:136-191,N:373-410)
1g: CATH_1kp8C02 (C:136-191,C:373-410)
1h: CATH_1kp8D02 (D:136-191,D:373-410)
1i: CATH_1kp8E02 (E:136-191,E:373-410)
1j: CATH_1kp8F02 (F:136-191,F:373-410)
1k: CATH_1kp8G02 (G:136-191,G:373-410)
1l: CATH_1kp8H02 (H:136-191,H:373-410)
1m: CATH_1kp8I02 (I:136-191,I:373-410)
1n: CATH_1kp8J02 (J:136-191,J:373-410)
2a: CATH_1kp8A03 (A:192-372)
2b: CATH_1kp8B03 (B:192-372)
2c: CATH_1kp8K03 (K:192-372)
2d: CATH_1kp8L03 (L:192-372)
2e: CATH_1kp8M03 (M:192-372)
2f: CATH_1kp8N03 (N:192-372)
2g: CATH_1kp8C03 (C:192-372)
2h: CATH_1kp8D03 (D:192-372)
2i: CATH_1kp8E03 (E:192-372)
2j: CATH_1kp8F03 (F:192-372)
2k: CATH_1kp8G03 (G:192-372)
2l: CATH_1kp8H03 (H:192-372)
2m: CATH_1kp8I03 (I:192-372)
2n: CATH_1kp8J03 (J:192-372)
3a: CATH_1kp8A01 (A:2-135,A:411-525)
3b: CATH_1kp8B01 (B:2-135,B:411-525)
3c: CATH_1kp8K01 (K:2-135,K:411-525)
3d: CATH_1kp8L01 (L:2-135,L:411-525)
3e: CATH_1kp8M01 (M:2-135,M:411-525)
3f: CATH_1kp8N01 (N:2-135,N:411-525)
3g: CATH_1kp8C01 (C:2-135,C:411-525)
3h: CATH_1kp8D01 (D:2-135,D:411-525)
3i: CATH_1kp8E01 (E:2-135,E:411-525)
3j: CATH_1kp8F01 (F:2-135,F:411-525)
3k: CATH_1kp8G01 (G:2-135,G:411-525)
3l: CATH_1kp8H01 (H:2-135,H:411-525)
3m: CATH_1kp8I01 (I:2-135,I:411-525)
3n: CATH_1kp8J01 (J:2-135,J:411-525)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GROEL; domain 2
(26)
Homologous Superfamily
:
GROEL, domain 2
(26)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1kp8A02
A:136-191,A:373-410
1b
1kp8B02
B:136-191,B:373-410
1c
1kp8K02
K:136-191,K:373-410
1d
1kp8L02
L:136-191,L:373-410
1e
1kp8M02
M:136-191,M:373-410
1f
1kp8N02
N:136-191,N:373-410
1g
1kp8C02
C:136-191,C:373-410
1h
1kp8D02
D:136-191,D:373-410
1i
1kp8E02
E:136-191,E:373-410
1j
1kp8F02
F:136-191,F:373-410
1k
1kp8G02
G:136-191,G:373-410
1l
1kp8H02
H:136-191,H:373-410
1m
1kp8I02
I:136-191,I:373-410
1n
1kp8J02
J:136-191,J:373-410
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
GroEL
(39)
Homologous Superfamily
:
GroEL
(39)
Escherichia coli. Organism_taxid: 562.
(11)
2a
1kp8A03
A:192-372
2b
1kp8B03
B:192-372
2c
1kp8K03
K:192-372
2d
1kp8L03
L:192-372
2e
1kp8M03
M:192-372
2f
1kp8N03
N:192-372
2g
1kp8C03
C:192-372
2h
1kp8D03
D:192-372
2i
1kp8E03
E:192-372
2j
1kp8F03
F:192-372
2k
1kp8G03
G:192-372
2l
1kp8H03
H:192-372
2m
1kp8I03
I:192-372
2n
1kp8J03
J:192-372
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GROEL; domain 1
(26)
Homologous Superfamily
:
GROEL, domain 1
(26)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1kp8A01
A:2-135,A:411-525
3b
1kp8B01
B:2-135,B:411-525
3c
1kp8K01
K:2-135,K:411-525
3d
1kp8L01
L:2-135,L:411-525
3e
1kp8M01
M:2-135,M:411-525
3f
1kp8N01
N:2-135,N:411-525
3g
1kp8C01
C:2-135,C:411-525
3h
1kp8D01
D:2-135,D:411-525
3i
1kp8E01
E:2-135,E:411-525
3j
1kp8F01
F:2-135,F:411-525
3k
1kp8G01
G:2-135,G:411-525
3l
1kp8H01
H:2-135,H:411-525
3m
1kp8I01
I:2-135,I:411-525
3n
1kp8J01
J:2-135,J:411-525
[
close CATH info
]
Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_Cpn60_TCP1_1kp8N01 (N:23-525)
1b: PFAM_Cpn60_TCP1_1kp8N02 (N:23-525)
1c: PFAM_Cpn60_TCP1_1kp8N03 (N:23-525)
1d: PFAM_Cpn60_TCP1_1kp8N04 (N:23-525)
1e: PFAM_Cpn60_TCP1_1kp8N05 (N:23-525)
1f: PFAM_Cpn60_TCP1_1kp8N06 (N:23-525)
1g: PFAM_Cpn60_TCP1_1kp8N07 (N:23-525)
1h: PFAM_Cpn60_TCP1_1kp8N08 (N:23-525)
1i: PFAM_Cpn60_TCP1_1kp8N09 (N:23-525)
1j: PFAM_Cpn60_TCP1_1kp8N10 (N:23-525)
1k: PFAM_Cpn60_TCP1_1kp8N11 (N:23-525)
1l: PFAM_Cpn60_TCP1_1kp8N12 (N:23-525)
1m: PFAM_Cpn60_TCP1_1kp8N13 (N:23-525)
1n: PFAM_Cpn60_TCP1_1kp8N14 (N:23-525)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Cpn60_TCP1]
(28)
Family
:
Cpn60_TCP1
(28)
Escherichia coli (strain K12)
(13)
1a
Cpn60_TCP1-1kp8N01
N:23-525
1b
Cpn60_TCP1-1kp8N02
N:23-525
1c
Cpn60_TCP1-1kp8N03
N:23-525
1d
Cpn60_TCP1-1kp8N04
N:23-525
1e
Cpn60_TCP1-1kp8N05
N:23-525
1f
Cpn60_TCP1-1kp8N06
N:23-525
1g
Cpn60_TCP1-1kp8N07
N:23-525
1h
Cpn60_TCP1-1kp8N08
N:23-525
1i
Cpn60_TCP1-1kp8N09
N:23-525
1j
Cpn60_TCP1-1kp8N10
N:23-525
1k
Cpn60_TCP1-1kp8N11
N:23-525
1l
Cpn60_TCP1-1kp8N12
N:23-525
1m
Cpn60_TCP1-1kp8N13
N:23-525
1n
Cpn60_TCP1-1kp8N14
N:23-525
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (1.1 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1KP8
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help