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1KOR
Asym. Unit
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Asym.Unit (272 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS HB8 ARGININOSUCCINATE SYNTHETASE IN COMPLEX WITH INHIBITORS
Authors
:
M. Goto, Y. Nakajima, K. Hirotsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
22 Dec 01 (Deposition) - 03 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ligase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Goto, Y. Nakajima, K. Hirotsu
Crystal Structure Of Argininosuccinate Synthetase From Thermus Thermophilus Hb8. Structural Basis For The Catalytic Action.
J. Biol. Chem. V. 277 15890 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
1c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
1d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
2a: ARGININE (ARGa)
2b: ARGININE (ARGb)
2c: ARGININE (ARGc)
2d: ARGININE (ARGd)
3a: SUCCINIC ACID (SINa)
3b: SUCCINIC ACID (SINb)
3c: SUCCINIC ACID (SINc)
3d: SUCCINIC ACID (SINd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
4
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
ARG
4
Mod. Amino Acid
ARGININE
3
SIN
4
Ligand/Ion
SUCCINIC ACID
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:6 , SER A:8 , GLY A:10 , LEU A:11 , ASP A:12 , THR A:13 , PHE A:31 , THR A:32 , ALA A:33 , GLN A:37 , HIS A:113 , GLY A:114 , ARG A:520 , HOH A:4314 , HOH A:4783
BINDING SITE FOR RESIDUE ANP A 510
02
AC2
SOFTWARE
ALA B:6 , TYR B:7 , SER B:8 , GLY B:10 , LEU B:11 , ASP B:12 , THR B:13 , PHE B:31 , THR B:32 , ALA B:33 , GLN B:37 , ARG B:92 , HIS B:113 , GLY B:114 , PHE B:125 , ARG B:1520 , HOH B:4252 , HOH B:4699
BINDING SITE FOR RESIDUE ANP B 1510
03
AC3
SOFTWARE
ALA C:6 , SER C:8 , GLY C:10 , LEU C:11 , ASP C:12 , THR C:13 , PHE C:31 , THR C:32 , ALA C:33 , GLN C:37 , ARG C:92 , HIS C:113 , GLY C:114 , PHE C:125 , ARG C:2520
BINDING SITE FOR RESIDUE ANP C 2510
04
AC4
SOFTWARE
ALA D:6 , TYR D:7 , SER D:8 , GLY D:10 , LEU D:11 , ASP D:12 , THR D:13 , PHE D:31 , THR D:32 , ALA D:33 , GLN D:37 , ARG D:92 , HIS D:113 , GLY D:114 , PHE D:125 , ARG D:3520 , HOH D:4319
BINDING SITE FOR RESIDUE ANP D 3510
05
AC5
SOFTWARE
TYR A:84 , THR A:88 , SER A:89 , ARG A:92 , ASN A:120 , ASP A:121 , ARG A:124 , SER A:173 , GLU A:184 , GLU A:258 , TYR A:270 , TYR A:310 , ANP A:510 , SIN A:530 , HOH A:4018
BINDING SITE FOR RESIDUE ARG A 520
06
AC6
SOFTWARE
TYR B:84 , SER B:89 , ARG B:92 , ASN B:120 , ASP B:121 , ARG B:124 , GLU B:184 , GLU B:258 , TYR B:270 , TYR B:310 , ANP B:1510 , SIN B:1530 , HOH B:4065
BINDING SITE FOR RESIDUE ARG B 1520
07
AC7
SOFTWARE
TYR C:84 , SER C:89 , ARG C:92 , ASN C:120 , ASP C:121 , ARG C:124 , SER C:173 , GLU C:184 , GLU C:258 , TYR C:270 , TYR C:310 , ANP C:2510 , SIN C:2530 , HOH C:4172
BINDING SITE FOR RESIDUE ARG C 2520
08
AC8
SOFTWARE
TYR D:84 , SER D:89 , ARG D:92 , ASN D:120 , ASP D:121 , ARG D:124 , SER D:173 , SER D:182 , GLU D:184 , GLU D:258 , TYR D:270 , TYR D:310 , ANP D:3510 , SIN D:3530 , HOH D:4261
BINDING SITE FOR RESIDUE ARG D 3520
09
AC9
SOFTWARE
ALA A:115 , THR A:116 , GLY A:119 , ASN A:120 , ASP A:121 , ARG A:520 , HOH A:4018 , HOH A:4226 , HOH A:4248 , HOH A:4783
BINDING SITE FOR RESIDUE SIN A 530
10
BC1
SOFTWARE
ALA B:115 , THR B:116 , GLY B:119 , ASN B:120 , ASP B:121 , ARG B:1520 , HOH B:4065 , HOH B:4265
BINDING SITE FOR RESIDUE SIN B 1530
11
BC2
SOFTWARE
ALA C:115 , THR C:116 , GLY C:119 , ASN C:120 , ASP C:121 , GLU C:184 , ARG C:2520 , HOH C:4098 , HOH C:4172
BINDING SITE FOR RESIDUE SIN C 2530
12
BC3
SOFTWARE
ALA D:115 , THR D:116 , GLY D:119 , ASN D:120 , ASP D:121 , GLU D:184 , ARG D:3520 , HOH D:4164 , HOH D:4261
BINDING SITE FOR RESIDUE SIN D 3530
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ARGININOSUCCIN_SYN_1 (A:6-14,B:6-14,C:6-14,D:6-14)
2: ARGININOSUCCIN_SYN_2 (A:114-125,B:114-125,C:114-125,D:11...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGININOSUCCIN_SYN_1
PS00564
Argininosuccinate synthase signature 1.
ASSY_THET8
6-14
4
A:6-14
B:6-14
C:6-14
D:6-14
2
ARGININOSUCCIN_SYN_2
PS00565
Argininosuccinate synthase signature 2.
ASSY_THET8
114-125
4
A:114-125
B:114-125
C:114-125
D:114-125
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1kora2 (A:171-395)
1b: SCOP_d1korb2 (B:171-395)
1c: SCOP_d1korc2 (C:171-395)
1d: SCOP_d1kord2 (D:171-395)
2a: SCOP_d1kora1 (A:1-165)
2b: SCOP_d1korb1 (B:1-165)
2c: SCOP_d1korc1 (C:1-165)
2d: SCOP_d1kord1 (D:1-165)
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)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Argininosuccinate synthetase, C-terminal domain
(14)
Superfamily
:
Argininosuccinate synthetase, C-terminal domain
(14)
Family
:
Argininosuccinate synthetase, C-terminal domain
(12)
Protein domain
:
Argininosuccinate synthetase, C-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
1a
d1kora2
A:171-395
1b
d1korb2
B:171-395
1c
d1korc2
C:171-395
1d
d1kord2
D:171-395
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
Argininosuccinate synthetase, N-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
2a
d1kora1
A:1-165
2b
d1korb1
B:1-165
2c
d1korc1
C:1-165
2d
d1kord1
D:1-165
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1korB01 (B:1-171)
1b: CATH_1korA01 (A:1-60,A:94-172)
1c: CATH_1korC01 (C:1-171)
1d: CATH_1korD01 (D:1-171)
2a: CATH_1korC02 (C:172-395)
2b: CATH_1korD02 (D:172-395)
2c: CATH_1korB02 (B:172-365)
2d: CATH_1korA02 (A:62-93,A:173-359)
3a: CATH_1korA03 (A:370-395)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
1a
1korB01
B:1-171
1b
1korA01
A:1-60,A:94-172
1c
1korC01
C:1-171
1d
1korD01
D:1-171
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Homologous Superfamily
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Thermus thermophilus. Organism_taxid: 274.
(7)
2a
1korC02
C:172-395
2b
1korD02
D:172-395
2c
1korB02
B:172-365
2d
1korA02
A:62-93,A:173-359
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(3)
Thermus thermophilus. Organism_taxid: 274.
(1)
3a
1korA03
A:370-395
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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