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1KO7
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (148 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE HPR KINASE/PHOSPHATASE FROM STAPHYLOCOCCUS XYLOSUS AT 1.95 A RESOLUTION
Authors
:
J. A. Marquez, S. Hasenbein, B. Koch, S. Fieulaine, S. Nessler, W. Hengstenberg, K. Scheffzek
Date
:
20 Dec 01 (Deposition) - 03 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (3x)
Biol. Unit 2: A (3x)
Keywords
:
Protein Kinase, Phosphotransfer, Protein Phosphatase, Dual Activity, Product, Substrate, Transferase, Hydrolase, Transferase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
J. A. Marquez, S. Hasenbein, B. Koch, S. Fieulaine, S. Nessler, R. B. Russell, W. Hengstenberg, K. Scheffzek
Structure Of The Full-Length Hpr Kinase/Phosphatase From Staphylococcus Xylosus At 1. 95 A Resolution: Mimicking The Product/Substrate Of The Phospho Transfer Reactions.
Proc. Natl. Acad. Sci. Usa V. 99 3458 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
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No.
Name
Count
Type
Full Name
1
PO4
6
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:33 , THR A:55 , THR A:56 , ARG A:88 , THR A:114 , HOH A:329 , TYR B:45 , ARG B:49
BINDING SITE FOR RESIDUE PO4 A 315
2
AC2
SOFTWARE
ARG A:49 , ARG A:250 , ARG B:33 , THR B:55 , THR B:56 , ARG B:88 , THR B:114 , HOH B:319
BINDING SITE FOR RESIDUE PO4 B 315
3
AC3
SOFTWARE
GLY A:154 , ILE A:155 , GLY A:156 , LYS A:157 , SER A:158 , GLU A:159 , PO4 A:317 , HOH A:438
BINDING SITE FOR RESIDUE PO4 A 316
4
AC4
SOFTWARE
HIS A:136 , SER A:153 , GLY A:154 , LYS A:157 , PO4 A:316 , HOH A:428
BINDING SITE FOR RESIDUE PO4 A 317
5
AC5
SOFTWARE
GLY B:154 , ILE B:155 , GLY B:156 , LYS B:157 , SER B:158 , GLU B:159 , ARG B:202 , PO4 B:317 , HOH B:341
BINDING SITE FOR RESIDUE PO4 B 316
6
AC6
SOFTWARE
HIS B:136 , SER B:153 , LYS B:157 , ARG B:202 , PO4 B:316
BINDING SITE FOR RESIDUE PO4 B 317
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ko7a1 (A:1-129)
1b: SCOP_d1ko7b1 (B:1-129)
2a: SCOP_d1ko7a2 (A:130-298)
2b: SCOP_d1ko7b2 (B:130-298)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
MurF and HprK N-domain-like
(5)
Superfamily
:
HprK N-terminal domain-like
(3)
Family
:
HPr kinase/phoshatase HprK N-terminal domain
(2)
Protein domain
:
HPr kinase/phoshatase HprK N-terminal domain
(2)
Staphylococcus xylosus [TaxId: 1288]
(1)
1a
d1ko7a1
A:1-129
1b
d1ko7b1
B:1-129
Fold
:
PEP carboxykinase-like
(61)
Superfamily
:
PEP carboxykinase-like
(61)
Family
:
HPr kinase HprK C-terminal domain
(6)
Protein domain
:
HPr kinase HprK C-terminal domain
(6)
Staphylococcus xylosus [TaxId: 1288]
(1)
2a
d1ko7a2
A:130-298
2b
d1ko7b2
B:130-298
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ko7A02 (A:130-288)
1b: CATH_1ko7B02 (B:130-288)
2a: CATH_1ko7A01 (A:1-129)
2b: CATH_1ko7B01 (B:1-128)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Staphylococcus xylosus. Organism_taxid: 1288.
(1)
1a
1ko7A02
A:130-288
1b
1ko7B02
B:130-288
Topology
:
Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1
(9)
Homologous Superfamily
:
[code=3.40.1390.20, no name defined]
(3)
Staphylococcus xylosus. Organism_taxid: 1288.
(1)
2a
1ko7A01
A:1-129
2b
1ko7B01
B:1-128
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Hpr_kinase_N_1ko7B01 (B:1-126)
1b: PFAM_Hpr_kinase_N_1ko7B02 (B:1-126)
2a: PFAM_Hpr_kinase_C_1ko7B03 (B:127-297)
2b: PFAM_Hpr_kinase_C_1ko7B04 (B:127-297)
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Clan
:
MurF-HprK_N
(2)
Family
:
Hpr_kinase_N
(2)
Staphylococcus xylosus
(1)
1a
Hpr_kinase_N-1ko7B01
B:1-126
1b
Hpr_kinase_N-1ko7B02
B:1-126
Clan
:
PEP-carboxyk
(36)
Family
:
Hpr_kinase_C
(6)
Staphylococcus xylosus
(1)
2a
Hpr_kinase_C-1ko7B03
B:127-297
2b
Hpr_kinase_C-1ko7B04
B:127-297
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Asym.Unit (104 KB)
Header - Asym.Unit
Biol.Unit 1 (145 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
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