PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1KLF
Biol. Unit 2
Info
Asym.Unit (614 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (86 KB)
Biol.Unit 4 (85 KB)
Biol.Unit 5 (83 KB)
Biol.Unit 6 (82 KB)
Biol.Unit 7 (83 KB)
Biol.Unit 8 (83 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FIMH ADHESIN-FIMC CHAPERONE COMPLEX WITH D-MANNOSE
Authors
:
C. S. Hung, J. Bouckaert
Date
:
11 Dec 01 (Deposition) - 05 Jun 02 (Release) - 30 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.79
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Adhesin-Chaperone Complex, Mannose-Bound, Chaperone/Adhesin Complex Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Hung, J. Bouckaert, D. Hung, J. Pinkner, C. Widberg, A. Defusco, C. G. Auguste, R. Strouse, S. Langermann, G. Waksman, S. J. Hultgren
Structural Basis Of Tropism Of Escherichia Coli To The Bladder During Urinary Tract Infection.
Mol. Microbiol. V. 44 903 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
1e: ALPHA-D-MANNOSE (MANe)
1f: ALPHA-D-MANNOSE (MANf)
1g: ALPHA-D-MANNOSE (MANg)
1h: ALPHA-D-MANNOSE (MANh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
PHE D:1 , ILE D:13 , ASN D:46 , ASP D:47 , TYR D:48 , ILE D:52 , ASP D:54 , GLN D:133 , ASN D:135 , ASP D:140 , PHE D:142 , HOH D:1609
BINDING SITE FOR RESIDUE MAN D 1601
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FIMC_ECOLI_002 (V18V, chain C, )
2: VAR_FIMC_ECOLI_003 (T174A, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FIMC_ECOLI_002
*
E
54
V
FIMC_ECOLI
---
---
C
V
18
V
2
UniProt
VAR_FIMC_ECOLI_003
*
T
210
A
FIMC_ECOLI
---
---
C
T
174
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (C:75-92)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
FIMC_ECOLI
111-128
1
-
C:75-92
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 32)
Info
All SCOP Domains
1a: SCOP_d1klfa2 (A:122-205)
1b: SCOP_d1klfi2 (I:122-205)
1c: SCOP_d1klfk2 (K:122-205)
1d: SCOP_d1klfm2 (M:122-205)
1e: SCOP_d1klfo2 (O:122-205)
1f: SCOP_d1klfc2 (C:122-205)
1g: SCOP_d1klfe2 (E:122-205)
1h: SCOP_d1klfg2 (G:122-205)
2a: SCOP_d1klfb1 (B:1-158)
2b: SCOP_d1klfb2 (B:159-279)
2c: SCOP_d1klfd1 (D:1-158)
2d: SCOP_d1klfd2 (D:159-279)
2e: SCOP_d1klff1 (F:1-158)
2f: SCOP_d1klff2 (F:159-279)
2g: SCOP_d1klfh1 (H:1-158)
2h: SCOP_d1klfh2 (H:159-279)
2i: SCOP_d1klfj1 (J:1-158)
2j: SCOP_d1klfj2 (J:159-279)
2k: SCOP_d1klfl1 (L:1-158)
2l: SCOP_d1klfl2 (L:159-279)
2m: SCOP_d1klfn1 (N:1-158)
2n: SCOP_d1klfn2 (N:159-279)
2o: SCOP_d1klfp1 (P:1-158)
2p: SCOP_d1klfp2 (P:159-279)
3a: SCOP_d1klfa1 (A:1-121)
3b: SCOP_d1klfi1 (I:1-121)
3c: SCOP_d1klfk1 (K:1-121)
3d: SCOP_d1klfm1 (M:1-121)
3e: SCOP_d1klfo1 (O:1-121)
3f: SCOP_d1klfc1 (C:1-121)
3g: SCOP_d1klfe1 (E:1-121)
3h: SCOP_d1klfg1 (G:1-121)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
FimC
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1klfa2
A:122-205
1b
d1klfi2
I:122-205
1c
d1klfk2
K:122-205
1d
d1klfm2
M:122-205
1e
d1klfo2
O:122-205
1f
d1klfc2
C:122-205
1g
d1klfe2
E:122-205
1h
d1klfg2
G:122-205
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
Mannose-specific adhesin FimH
(22)
Escherichia coli [TaxId: 562]
(22)
2a
d1klfb1
B:1-158
2b
d1klfb2
B:159-279
2c
d1klfd1
D:1-158
2d
d1klfd2
D:159-279
2e
d1klff1
F:1-158
2f
d1klff2
F:159-279
2g
d1klfh1
H:1-158
2h
d1klfh2
H:159-279
2i
d1klfj1
J:1-158
2j
d1klfj2
J:159-279
2k
d1klfl1
L:1-158
2l
d1klfl2
L:159-279
2m
d1klfn1
N:1-158
2n
d1klfn2
N:159-279
2o
d1klfp1
P:1-158
2p
d1klfp2
P:159-279
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Periplasmic chaperone FimC
(8)
Escherichia coli [TaxId: 562]
(8)
3a
d1klfa1
A:1-121
3b
d1klfi1
I:1-121
3c
d1klfk1
K:1-121
3d
d1klfm1
M:1-121
3e
d1klfo1
O:1-121
3f
d1klfc1
C:1-121
3g
d1klfe1
E:1-121
3h
d1klfg1
G:1-121
[
close SCOP info
]
CATH Domains
(3, 32)
Info
all CATH domains
1a: CATH_1klfA02 (A:122-204)
1b: CATH_1klfC02 (C:122-204)
1c: CATH_1klfE02 (E:122-204)
1d: CATH_1klfG02 (G:122-204)
1e: CATH_1klfI02 (I:122-204)
1f: CATH_1klfK02 (K:122-204)
1g: CATH_1klfM02 (M:122-204)
1h: CATH_1klfO02 (O:122-204)
2a: CATH_1klfB01 (B:1-159)
2b: CATH_1klfB02 (B:160-279)
2c: CATH_1klfD02 (D:160-279)
2d: CATH_1klfF02 (F:160-279)
2e: CATH_1klfH02 (H:160-279)
2f: CATH_1klfJ02 (J:160-279)
2g: CATH_1klfL02 (L:160-279)
2h: CATH_1klfN02 (N:160-279)
2i: CATH_1klfP02 (P:160-279)
2j: CATH_1klfD01 (D:1-159)
2k: CATH_1klfF01 (F:1-159)
2l: CATH_1klfH01 (H:1-159)
2m: CATH_1klfJ01 (J:1-159)
2n: CATH_1klfL01 (L:1-159)
2o: CATH_1klfN01 (N:1-159)
2p: CATH_1klfP01 (P:1-159)
3a: CATH_1klfA01 (A:2-118)
3b: CATH_1klfC01 (C:2-118)
3c: CATH_1klfE01 (E:2-118)
3d: CATH_1klfG01 (G:2-118)
3e: CATH_1klfI01 (I:2-118)
3f: CATH_1klfK01 (K:2-118)
3g: CATH_1klfM01 (M:2-118)
3h: CATH_1klfO01 (O:2-118)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1070, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1klfA02
A:122-204
1b
1klfC02
C:122-204
1c
1klfE02
E:122-204
1d
1klfG02
G:122-204
1e
1klfI02
I:122-204
1f
1klfK02
K:122-204
1g
1klfM02
M:122-204
1h
1klfO02
O:122-204
Homologous Superfamily
:
[code=2.60.40.1090, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1klfB01
B:1-159
2b
1klfB02
B:160-279
2c
1klfD02
D:160-279
2d
1klfF02
F:160-279
2e
1klfH02
H:160-279
2f
1klfJ02
J:160-279
2g
1klfL02
L:160-279
2h
1klfN02
N:160-279
2i
1klfP02
P:160-279
2j
1klfD01
D:1-159
2k
1klfF01
F:1-159
2l
1klfH01
H:1-159
2m
1klfJ01
J:1-159
2n
1klfL01
L:1-159
2o
1klfN01
N:1-159
2p
1klfP01
P:1-159
Homologous Superfamily
:
PapD-like
(38)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1klfA01
A:2-118
3b
1klfC01
C:2-118
3c
1klfE01
E:2-118
3d
1klfG01
G:2-118
3e
1klfI01
I:2-118
3f
1klfK01
K:2-118
3g
1klfM01
M:2-118
3h
1klfO01
O:2-118
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (614 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
Biol.Unit 3 (86 KB)
Header - Biol.Unit 3
Biol.Unit 4 (85 KB)
Header - Biol.Unit 4
Biol.Unit 5 (83 KB)
Header - Biol.Unit 5
Biol.Unit 6 (82 KB)
Header - Biol.Unit 6
Biol.Unit 7 (83 KB)
Header - Biol.Unit 7
Biol.Unit 8 (83 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1KLF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help