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1KKQ
Biol. Unit 2
Info
Asym.Unit (201 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN PPAR-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH AN ANTAGONIST GW6471 AND A SMRT COREPRESSOR MOTIF
Authors
:
H. E. Xu, T. B. Stanley, V. G. Montana, M. H. Lambert, B. G. Shearer, J. E. C D. D. Mckee, C. M. Galardi, R. T. Nolte, D. J. Parks
Date
:
10 Dec 01 (Deposition) - 20 Feb 02 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Nuclear Corepressor Nuclear Hormone Receptors Antagonist, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. E. Xu, T. B. Stanley, V. G. Montana, M. H. Lambert, B. G. Shearer, J. E. Cobb, D. D. Mckee, C. M. Galardi, K. D. Plunket, R. T. Nolte, D. J. Parks, J. T. Moore, S. A. Kliewer, T. M. Willson, J. B. Stimmel
Structural Basis For Antagonist-Mediated Recruitment Of Nuclear Co-Repressors By Pparalpha.
Nature V. 415 813 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471a)
1b: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471b)
1c: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471c)
1d: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471d)
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No.
Name
Count
Type
Full Name
1
471
1
Ligand/Ion
N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-[4-(TRIFLUOROMETHYL)PHENYL]PROP-1-ENYL}AMINO)-3-{4-[2-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)ETHOXY]PHENYL}PROPYL)PROPANAMIDE
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Sites
(1, 1)
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All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LEU B:254 , ILE B:272 , CYS B:276 , THR B:279 , SER B:280 , TYR B:314 , MET B:330 , VAL B:332 , LEU B:344 , PHE B:351 , ILE B:354 , MET B:355 , HIS B:440 , HOH B:794
BINDING SITE FOR RESIDUE 471 B 776
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016112 (V227A, chain B, )
2: VAR_016113 (A268V, chain B, )
3: VAR_016114 (D304N, chain B, )
4: VAR_050578 (G395R, chain B, )
5: VAR_016115 (R409T, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016112
V
227
A
PPARA_HUMAN
Polymorphism
1800234
B
V
227
A
2
UniProt
VAR_016113
A
268
V
PPARA_HUMAN
Polymorphism
1042311
B
A
268
V
3
UniProt
VAR_016114
D
304
N
PPARA_HUMAN
Polymorphism
1800242
B
D
304
N
4
UniProt
VAR_050578
G
395
R
PPARA_HUMAN
Polymorphism
2229245
B
G
395
R
5
UniProt
VAR_016115
R
409
T
PPARA_HUMAN
Polymorphism
1800243
B
R
409
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1kkqa_ (A:)
1b: SCOP_d1kkqb_ (B:)
1c: SCOP_d1kkqc_ (C:)
1d: SCOP_d1kkqd_ (D:)
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(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor alpha, PPAR-alpha
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1kkqa_
A:
1b
d1kkqb_
B:
1c
d1kkqc_
C:
1d
d1kkqd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1kkqA00 (A:200-468)
1b: CATH_1kkqB00 (B:200-468)
1c: CATH_1kkqC00 (C:200-468)
1d: CATH_1kkqD00 (D:200-468)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1kkqA00
A:200-468
1b
1kkqB00
B:200-468
1c
1kkqC00
C:200-468
1d
1kkqD00
D:200-468
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1kkqD01 (D:241-450)
1b: PFAM_Hormone_recep_1kkqD02 (D:241-450)
1c: PFAM_Hormone_recep_1kkqD03 (D:241-450)
1d: PFAM_Hormone_recep_1kkqD04 (D:241-450)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1kkqD01
D:241-450
1b
Hormone_recep-1kkqD02
D:241-450
1c
Hormone_recep-1kkqD03
D:241-450
1d
Hormone_recep-1kkqD04
D:241-450
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (201 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
Biol.Unit 3 (51 KB)
Header - Biol.Unit 3
Biol.Unit 4 (51 KB)
Header - Biol.Unit 4
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