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1KKQ
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN PPAR-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH AN ANTAGONIST GW6471 AND A SMRT COREPRESSOR MOTIF
Authors
:
H. E. Xu, T. B. Stanley, V. G. Montana, M. H. Lambert, B. G. Shearer, J. E. C D. D. Mckee, C. M. Galardi, R. T. Nolte, D. J. Parks
Date
:
10 Dec 01 (Deposition) - 20 Feb 02 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Nuclear Corepressor Nuclear Hormone Receptors Antagonist, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. E. Xu, T. B. Stanley, V. G. Montana, M. H. Lambert, B. G. Shearer, J. E. Cobb, D. D. Mckee, C. M. Galardi, K. D. Plunket, R. T. Nolte, D. J. Parks, J. T. Moore, S. A. Kliewer, T. M. Willson, J. B. Stimmel
Structural Basis For Antagonist-Mediated Recruitment Of Nuclear Co-Repressors By Pparalpha.
Nature V. 415 813 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471a)
1b: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471b)
1c: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471c)
1d: N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-... (471d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
471
4
Ligand/Ion
N-((2S)-2-({(1Z)-1-METHYL-3-OXO-3-[4-(TRIFLUOROMETHYL)PHENYL]PROP-1-ENYL}AMINO)-3-{4-[2-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)ETHOXY]PHENYL}PROPYL)PROPANAMIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:254 , GLU A:269 , ILE A:272 , PHE A:273 , CYS A:275 , CYS A:276 , SER A:280 , TYR A:314 , VAL A:332 , PHE A:351 , ILE A:354 , HIS A:440 , VAL A:444 , LEU A:456 , HOH A:798
BINDING SITE FOR RESIDUE 471 A 775
2
AC2
SOFTWARE
LEU B:254 , ILE B:272 , CYS B:276 , THR B:279 , SER B:280 , TYR B:314 , MET B:330 , VAL B:332 , LEU B:344 , PHE B:351 , ILE B:354 , MET B:355 , HIS B:440 , HOH B:794
BINDING SITE FOR RESIDUE 471 B 776
3
AC3
SOFTWARE
ILE C:241 , ILE C:272 , PHE C:273 , CYS C:275 , CYS C:276 , GLN C:277 , THR C:279 , SER C:280 , TYR C:314 , MET C:330 , VAL C:332 , PHE C:351 , ILE C:354 , HIS C:440 , HOH C:816
BINDING SITE FOR RESIDUE 471 C 777
4
AC4
SOFTWARE
LEU D:254 , GLU D:269 , ILE D:272 , PHE D:273 , CYS D:276 , GLN D:277 , SER D:280 , TYR D:314 , MET D:330 , VAL D:332 , LEU D:344 , PHE D:351 , HOH D:779
BINDING SITE FOR RESIDUE 471 D 778
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SAPs(SNPs)/Variants
(5, 20)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016112 (V227A, chain A/B/C/D, )
2: VAR_016113 (A268V, chain A/B/C/D, )
3: VAR_016114 (D304N, chain A/B/C/D, )
4: VAR_050578 (G395R, chain A/B/C/D, )
5: VAR_016115 (R409T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016112
V
227
A
PPARA_HUMAN
Polymorphism
1800234
A/B/C/D
V
227
A
2
UniProt
VAR_016113
A
268
V
PPARA_HUMAN
Polymorphism
1042311
A/B/C/D
A
268
V
3
UniProt
VAR_016114
D
304
N
PPARA_HUMAN
Polymorphism
1800242
A/B/C/D
D
304
N
4
UniProt
VAR_050578
G
395
R
PPARA_HUMAN
Polymorphism
2229245
A/B/C/D
G
395
R
5
UniProt
VAR_016115
R
409
T
PPARA_HUMAN
Polymorphism
1800243
A/B/C/D
R
409
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 12)
Info
All Exons
Exon 1.12a (A:200-237 | B:200-237 | C:200-237 ...)
Exon 1.13 (A:238-387 | B:238-387 | C:238-387 ...)
Exon 1.14c (A:387-468 | B:387-468 | C:387-468 ...)
View:
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All Exon Boundaries
1: Boundary 1.11/1.12a
2: Boundary 1.12a/1.13
3: Boundary 1.13/1.14c
4: Boundary 1.14c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000262735
1c
ENSE00001411734
chr22:
46546499-46546555
57
PPARA_HUMAN
-
0
0
-
-
1.3c
ENST00000262735
3c
ENSE00001046654
chr22:
46547791-46547873
83
PPARA_HUMAN
-
0
0
-
-
1.9b
ENST00000262735
9b
ENSE00001434891
chr22:
46594239-46594488
250
PPARA_HUMAN
1-70
70
0
-
-
1.10a
ENST00000262735
10a
ENSE00000657264
chr22:
46611070-46611230
161
PPARA_HUMAN
70-123
54
0
-
-
1.11
ENST00000262735
11
ENSE00000657266
chr22:
46614160-46614298
139
PPARA_HUMAN
124-170
47
0
-
-
1.12a
ENST00000262735
12a
ENSE00000657268
chr22:
46615709-46615911
203
PPARA_HUMAN
170-237
68
4
A:200-237
B:200-237
C:200-237
D:200-237
38
38
38
38
1.13
ENST00000262735
13
ENSE00000657269
chr22:
46627689-46628136
448
PPARA_HUMAN
238-387
150
4
A:238-387
B:238-387
C:238-387
D:238-387
150
150
150
150
1.14c
ENST00000262735
14c
ENSE00000880791
chr22:
46631030-46639653
8624
PPARA_HUMAN
387-468
82
4
A:387-468
B:387-468
C:387-468
D:387-468
82
82
82
82
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1kkqa_ (A:)
1b: SCOP_d1kkqb_ (B:)
1c: SCOP_d1kkqc_ (C:)
1d: SCOP_d1kkqd_ (D:)
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(
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(
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(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor alpha, PPAR-alpha
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1kkqa_
A:
1b
d1kkqb_
B:
1c
d1kkqc_
C:
1d
d1kkqd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1kkqA00 (A:200-468)
1b: CATH_1kkqB00 (B:200-468)
1c: CATH_1kkqC00 (C:200-468)
1d: CATH_1kkqD00 (D:200-468)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1kkqA00
A:200-468
1b
1kkqB00
B:200-468
1c
1kkqC00
C:200-468
1d
1kkqD00
D:200-468
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1kkqD01 (D:241-450)
1b: PFAM_Hormone_recep_1kkqD02 (D:241-450)
1c: PFAM_Hormone_recep_1kkqD03 (D:241-450)
1d: PFAM_Hormone_recep_1kkqD04 (D:241-450)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1kkqD01
D:241-450
1b
Hormone_recep-1kkqD02
D:241-450
1c
Hormone_recep-1kkqD03
D:241-450
1d
Hormone_recep-1kkqD04
D:241-450
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Asym.Unit (201 KB)
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