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1KK4
Asym. Unit
Info
Asym.Unit (212 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VAT(D) IN COMPLEX WITH ACETYL-COA
Authors
:
M. Sugantino, S. L. Roderick
Date
:
06 Dec 01 (Deposition) - 20 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Antibiotic Resistance, Acyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sugantino, S. L. Roderick
Crystal Structure Of Vat(D): An Acetyltransferase That Inactivates Streptogramin Group A Antibiotics.
Biochemistry V. 41 2209 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
1c: ACETYL COENZYME *A (ACOc)
1d: ACETYL COENZYME *A (ACOd)
1e: ACETYL COENZYME *A (ACOe)
1f: ACETYL COENZYME *A (ACOf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACO
6
Ligand/Ion
ACETYL COENZYME *A
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:37 , ILE A:69 , GLY A:70 , TRP A:121 , LYS A:124 , ALA A:141 , ALA A:142 , LEU A:155 , GLY A:157 , GLY A:158 , ILE A:164 , HOH A:3601 , HIS B:82 , MET B:84 , LYS B:111 , MET B:129 , VAL B:147
BINDING SITE FOR RESIDUE ACO A 301
2
AC2
SOFTWARE
TYR B:37 , ILE B:69 , GLY B:70 , TRP B:121 , LYS B:124 , ALA B:141 , ALA B:142 , LEU B:155 , GLY B:157 , GLY B:158 , ILE B:164 , HOH B:3602 , HOH B:3650 , ALA C:80 , HIS C:82 , MET C:84 , LYS C:111 , MET C:129 , VAL C:147 , LYS C:148 , PRO C:160
BINDING SITE FOR RESIDUE ACO B 302
3
AC3
SOFTWARE
HIS A:82 , MET A:84 , LYS A:111 , VAL A:147 , LYS A:148 , PRO A:160 , TYR C:37 , ILE C:69 , GLY C:70 , TRP C:121 , ILE C:122 , GLY C:123 , LYS C:124 , ALA C:141 , ALA C:142 , LEU C:155 , GLY C:157 , GLY C:158 , ILE C:164 , HOH C:3590 , HOH C:3609 , HOH C:3649
BINDING SITE FOR RESIDUE ACO C 303
4
AC4
SOFTWARE
TYR D:37 , ILE D:69 , GLY D:70 , TRP D:121 , ILE D:122 , LYS D:124 , ALA D:141 , ALA D:142 , LEU D:155 , GLY D:157 , GLY D:158 , ILE D:164 , HOH D:3587 , HOH D:3642 , TYR E:52 , HIS E:82 , MET E:84 , LYS E:111 , MET E:129 , VAL E:147 , PRO E:160
BINDING SITE FOR RESIDUE ACO D 304
5
AC5
SOFTWARE
TYR E:37 , ILE E:69 , GLY E:70 , TRP E:121 , ILE E:122 , LYS E:124 , ALA E:141 , ALA E:142 , LEU E:155 , GLY E:157 , GLY E:158 , ILE E:164 , HOH E:3589 , HOH E:3605 , HOH E:3647 , HIS F:82 , MET F:84 , LYS F:111 , VAL F:147
BINDING SITE FOR RESIDUE ACO E 305
6
AC6
SOFTWARE
TYR D:52 , HIS D:82 , MET D:84 , LYS D:111 , VAL D:147 , PRO D:160 , TYR F:37 , ASP F:39 , ILE F:69 , GLY F:70 , TRP F:121 , ILE F:122 , LYS F:124 , ALA F:141 , ALA F:142 , LEU F:155 , GLY F:157 , GLY F:158 , ILE F:164 , HOH F:3606 , HOH F:3607
BINDING SITE FOR RESIDUE ACO F 306
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:122-150,B:122-150,C:122-150,D:12...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
VATD_ENTFC
122-150
6
A:122-150
B:122-150
C:122-150
D:122-150
E:122-150
F:122-150
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1kk4a_ (A:)
1b: SCOP_d1kk4b_ (B:)
1c: SCOP_d1kk4c_ (C:)
1d: SCOP_d1kk4d_ (D:)
1e: SCOP_d1kk4e_ (E:)
1f: SCOP_d1kk4f_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
Galactoside acetyltransferase-like
(21)
Protein domain
:
Xenobiotic acetyltransferase
(10)
Enterococcus faecium, VAT(D) [TaxId: 1352]
(8)
1a
d1kk4a_
A:
1b
d1kk4b_
B:
1c
d1kk4c_
C:
1d
d1kk4d_
D:
1e
d1kk4e_
E:
1f
d1kk4f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1kk4A00 (A:1-205)
1b: CATH_1kk4B00 (B:1-205)
1c: CATH_1kk4C00 (C:1-205)
1d: CATH_1kk4D00 (D:1-206)
1e: CATH_1kk4E00 (E:1-206)
1f: CATH_1kk4F00 (F:1-206)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Enterococcus faecium. Organism_taxid: 1352.
(4)
1a
1kk4A00
A:1-205
1b
1kk4B00
B:1-205
1c
1kk4C00
C:1-205
1d
1kk4D00
D:1-206
1e
1kk4E00
E:1-206
1f
1kk4F00
F:1-206
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Hexapep_1kk4F01 (F:113-148)
1b: PFAM_Hexapep_1kk4F02 (F:113-148)
1c: PFAM_Hexapep_1kk4F03 (F:113-148)
1d: PFAM_Hexapep_1kk4F04 (F:113-148)
1e: PFAM_Hexapep_1kk4F05 (F:113-148)
1f: PFAM_Hexapep_1kk4F06 (F:113-148)
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Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Enterococcus faecium (Streptococcus faecium)
(6)
1a
Hexapep-1kk4F01
F:113-148
1b
Hexapep-1kk4F02
F:113-148
1c
Hexapep-1kk4F03
F:113-148
1d
Hexapep-1kk4F04
F:113-148
1e
Hexapep-1kk4F05
F:113-148
1f
Hexapep-1kk4F06
F:113-148
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Asym.Unit (212 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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