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1KJV
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
TAP-B-ASSOCIATED RAT MHC CLASS I MOLECULE
Authors
:
M. G. Rudolph, J. Stevens, J. A. Speir, J. Trowsdale, G. W. Butcher, E. Joly, I. A. Wilson
Date
:
05 Dec 01 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B,P
Biol. Unit 1: A,B,P (1x)
Keywords
:
Peptide-Mhc, Major Histocompatibility Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Rudolph, J. Stevens, J. A. Speir, J. Trowsdale, G. W. Butcher, E. Joly, I. A. Wilson
Crystal Structures Of Two Rat Mhc Class Ia (Rt1-A) Molecules That Are Associated Differentially With Peptide Transporter Alleles Tap-A And Tap-B.
J. Mol. Biol. V. 324 975 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:75 , ASP A:137 , PHE A:138 , ARG A:141 , HOH A:655 , HOH A:674 , HOH A:774
BINDING SITE FOR RESIDUE SO4 A 501
2
AC2
SOFTWARE
THR A:258 , ARG A:260 , SER A:271 , ARG A:273 , LYS B:44 , LYS B:45 , HOH B:549 , HOH B:569
BINDING SITE FOR RESIDUE SO4 B 502
3
AC3
SOFTWARE
ARG A:75 , ARG A:79 , ARG A:82 , HOH A:520
BINDING SITE FOR RESIDUE SO4 A 503
4
AC4
SOFTWARE
LYS B:41 , PHE B:70 , THR B:71 , TYR B:78
BINDING SITE FOR RESIDUE SO4 B 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_RAT
98-104
1
B:78-84
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (B:0-3)
Exon 1.2 (B:3-96)
Exon 1.3 (B:96-99)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000023017
1
ENSRNOE00000164042
chr3:
108927919-108927992
74
B2MG_RAT
1-23
23
1
B:0-3
4
1.2
ENSRNOT00000023017
2
ENSRNOE00000164162
chr3:
108930763-108931041
279
B2MG_RAT
23-116
94
1
B:3-96
94
1.3
ENSRNOT00000023017
3
ENSRNOE00000164268
chr3:
108931555-108931583
29
B2MG_RAT
116-119
4
1
B:96-99
4
1.4
ENSRNOT00000023017
4
ENSRNOE00000164313
chr3:
108932497-108932718
222
B2MG_RAT
-
0
0
-
-
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1kjvb_ (B:)
2a: SCOP_d1kjva1 (A:182-276)
3a: SCOP_d1kjva2 (A:1-181)
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)
(
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)
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d1kjvb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Norway rat (Rattus norvegicus), RT1-AA [TaxId: 10116]
(3)
2a
d1kjva1
A:182-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Norway rat (Rattus norvegicus), RT1-AA [TaxId: 10116]
(3)
3a
d1kjva2
A:1-181
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1kjvA01 (A:1-181)
2a: CATH_1kjvB00 (B:0-99)
2b: CATH_1kjvA02 (A:182-272)
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Classes
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)
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)
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)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Norway rat (Rattus norvegicus)
(5)
1a
1kjvA01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Norway rat (Rattus norvegicus)
(32)
2a
1kjvB00
B:0-99
2b
1kjvA02
A:182-272
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_C1_set_1kjvB01 (B:11-92)
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Organisms
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)
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)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Rattus norvegicus (Rat)
(3)
1a
C1-set-1kjvB01
B:11-92
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Asymmetric Unit 1
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Asym.Unit (154 KB)
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