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1KJL
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
HIGH RESOLUTION X-RAY STRUCTURE OF HUMAN GALECTIN-3 IN COMPLEX WITH LACNAC
Authors
:
P. Sorme, P. Arnoux, B. Kahl-Knutsson, H. Leffler, J. M. Rini, U. J. Nils
Date
:
04 Dec 01 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lacnac Complex, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Sorme, P. Arnoux, B. Kahl-Knutsson, H. Leffler, J. M. Rini, U. J. Nilsson
Structural And Thermodynamic Studies On Cation-Pi Interactions In Lectin-Ligand Complexes: High-Affinity Galectin-3 Inhibitors Through Fine-Tuning Of An Arginine-Arene Interaction.
J. Am. Chem. Soc. V. 127 1737 2005
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
2a: CHLORIDE ION (CLa)
3a: BETA-D-GALACTOSE (GALa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
2
Ligand/Ion
BROMIDE ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:158 , ASN A:160 , ARG A:162 , ASN A:174 , GLU A:184 , NAG A:502 , HOH A:680 , HOH A:728
BINDING SITE FOR RESIDUE GAL A 501
2
AC2
SOFTWARE
ARG A:162 , GLU A:184 , ARG A:186 , GAL A:501 , HOH A:650 , HOH A:749
BINDING SITE FOR RESIDUE NAG A 502
3
AC3
SOFTWARE
LYS A:226 , LYS A:227
BINDING SITE FOR RESIDUE CL A 300
4
AC4
SOFTWARE
ARG A:224 , HOH A:625 , HOH A:705
BINDING SITE FOR RESIDUE BR A 301
5
AC5
SOFTWARE
GLY A:238
BINDING SITE FOR RESIDUE BR A 302
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049768 (R183K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049768
R
183
K
LEG3_HUMAN
Polymorphism
10148371
A
R
183
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:118-248)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG3_HUMAN
118-248
1
A:118-248
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Exons
(4, 4)
Info
All Exons
Exon 1.2c (A:113-114)
Exon 1.3 (A:115-144)
Exon 1.4 (A:144-199)
Exon 1.5b (A:200-250)
View:
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All Exon Boundaries
1: Boundary 1.2b/1.2c
2: Boundary 1.2c/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000254301
1
ENSE00001536507
chr14:
55595872-55596018
147
LEG3_HUMAN
-
0
0
-
-
1.2b
ENST00000254301
2b
ENSE00001536493
chr14:
55604088-55604109
22
LEG3_HUMAN
1-6
6
0
-
-
1.2c
ENST00000254301
2c
ENSE00001002799
chr14:
55604763-55605086
324
LEG3_HUMAN
7-114
108
1
A:113-114
2
1.3
ENST00000254301
3
ENSE00001757559
chr14:
55606993-55607081
89
LEG3_HUMAN
115-144
30
1
A:115-144
30
1.4
ENST00000254301
4
ENSE00001682369
chr14:
55609302-55609467
166
LEG3_HUMAN
144-199
56
1
A:144-199
56
1.5b
ENST00000254301
5b
ENSE00001786819
chr14:
55611834-55612147
314
LEG3_HUMAN
200-250
51
1
A:200-250
51
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kjla_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1kjla_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1kjlA00 (A:113-250)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Human (Homo sapiens)
(49)
1a
1kjlA00
A:113-250
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_1kjlA01 (A:117-247)
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Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Homo sapiens (Human)
(25)
1a
Gal-bind_lectin-1kjlA01
A:117-247
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Chain A
Asymmetric Unit 1
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