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1KJD
Theor. Model
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(1)
Title
:
THEORETICAL MODEL OF P-SELECTIN, C-TYPE LECTIN DOMAIN, RESIDUES 1-120, CELL ADHESION MOLECULE
Authors
:
J. Bajorath, R. Stenkamp, A. Aruffo
Date
:
28 Nov 95 (Deposition) - 03 Apr 96 (Release) - 03 Apr 96 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Cell Adhesion Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bajorath, R. Stenkamp, A. Aruffo
Knowledge-Based Model Building Of Proteins: Concepts And Examples.
Protein Sci. V. 2 1798 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:90-117)
2: EGF_3 (A:118-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LYAM3_HUMAN
131-158
1
A:90-117
2
EGF_3
PS50026
EGF-like domain profile.
LYAM3_HUMAN
159-195
1
A:118-120
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:1-120)
Exon 1.4 (A:120-120)
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000263686
1b
ENSE00001384287
chr1:
169599377-169599310
68
LYAM3_HUMAN
1-1
1
0
-
-
1.2b
ENST00000263686
2b
ENSE00001172331
chr1:
169588457-169588367
91
LYAM3_HUMAN
2-32
31
0
-
-
1.3
ENST00000263686
3
ENSE00000814471
chr1:
169586652-169586266
387
LYAM3_HUMAN
32-161
130
1
A:1-120
120
1.4
ENST00000263686
4
ENSE00000814474
chr1:
169582931-169582824
108
LYAM3_HUMAN
161-197
37
1
A:120-120
1
1.5
ENST00000263686
5
ENSE00000789626
chr1:
169582352-169582167
186
LYAM3_HUMAN
197-259
63
0
-
-
1.6
ENST00000263686
6
ENSE00000789625
chr1:
169581640-169581455
186
LYAM3_HUMAN
259-321
63
0
-
-
1.7
ENST00000263686
7
ENSE00000814478
chr1:
169580915-169580730
186
LYAM3_HUMAN
321-383
63
0
-
-
1.8
ENST00000263686
8
ENSE00000789623
chr1:
169578927-169578742
186
LYAM3_HUMAN
383-445
63
0
-
-
1.9a
ENST00000263686
9a
ENSE00000814480
chr1:
169576372-169576187
186
LYAM3_HUMAN
445-507
63
0
-
-
1.10
ENST00000263686
10
ENSE00000814483
chr1:
169572449-169572264
186
LYAM3_HUMAN
507-569
63
0
-
-
1.11
ENST00000263686
11
ENSE00000814484
chr1:
169566414-169566229
186
LYAM3_HUMAN
569-631
63
0
-
-
1.12
ENST00000263686
12
ENSE00000450611
chr1:
169565372-169565163
210
LYAM3_HUMAN
631-701
71
0
-
-
1.13
ENST00000263686
13
ENSE00000958551
chr1:
169564115-169563930
186
LYAM3_HUMAN
701-763
63
0
-
-
1.14
ENST00000263686
14
ENSE00000450613
chr1:
169562962-169562843
120
LYAM3_HUMAN
763-803
41
0
-
-
1.15b
ENST00000263686
15b
ENSE00001168517
chr1:
169560694-169560664
31
LYAM3_HUMAN
803-813
11
0
-
-
1.16b
ENST00000263686
16b
ENSE00001168504
chr1:
169559440-169559385
56
LYAM3_HUMAN
813-830
18
0
-
-
1.17h
ENST00000263686
17h
ENSE00001359830
chr1:
169558699-169558090
610
LYAM3_HUMAN
-
0
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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