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1KJA
Theor. Model
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Theoretical Model (19 KB)
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(1)
Title
:
THEORETICAL MODEL OF E-SELECTIN, C-TYPE LECTIN DOMAIN, RESIDUES 1-120, CELL ADHESION MOLECULE
Authors
:
J. Bajorath, R. Stenkamp, A. Aruffo
Date
:
28 Nov 95 (Deposition) - 03 Apr 96 (Release) - 03 Apr 96 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Cell Adhesion Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bajorath, R. Stenkamp, A. Aruffo
Comparison Of A Protein Model With Its X-Ray Structure: The Ligand Binding Domain Of E-Selectin.
Bioconjug. Chem. V. 6 3 1995
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
[
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]
Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014301 (M10I, chain A, )
2: VAR_011790 (C109W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014301
M
31
I
LYAM2_HUMAN
Polymorphism
3917408
A
M
10
I
2
UniProt
VAR_011790
C
130
W
LYAM2_HUMAN
Polymorphism
5360
A
C
109
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:90-117)
2: EGF_3 (A:118-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LYAM2_HUMAN
111-138
1
A:90-117
2
EGF_3
PS50026
EGF-like domain profile.
LYAM2_HUMAN
139-175
1
A:118-120
[
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (A:1-120)
Exon 1.4a (A:120-120)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000333360
1b
ENSE00001950222
chr1:
169703203-169703112
92
LYAM2_HUMAN
-
0
0
-
-
1.2a
ENST00000333360
2a
ENSE00001367867
chr1:
169702801-169702717
85
LYAM2_HUMAN
1-13
13
0
-
-
1.3a
ENST00000333360
3a
ENSE00000814463
chr1:
169702139-169701756
384
LYAM2_HUMAN
13-141
129
1
A:1-120
120
1.4a
ENST00000333360
4a
ENSE00000789645
chr1:
169701083-169700976
108
LYAM2_HUMAN
141-177
37
1
A:120-120
1
1.5
ENST00000333360
5
ENSE00000789644
chr1:
169699758-169699573
186
LYAM2_HUMAN
177-239
63
0
-
-
1.6
ENST00000333360
6
ENSE00000451012
chr1:
169698814-169698629
186
LYAM2_HUMAN
239-301
63
0
-
-
1.7
ENST00000333360
7
ENSE00000789642
chr1:
169698515-169698327
189
LYAM2_HUMAN
301-364
64
0
-
-
1.8
ENST00000333360
8
ENSE00000789641
chr1:
169697387-169697199
189
LYAM2_HUMAN
364-427
64
0
-
-
1.9
ENST00000333360
9
ENSE00000451027
chr1:
169697068-169696880
189
LYAM2_HUMAN
427-490
64
0
-
-
1.10
ENST00000333360
10
ENSE00000789639
chr1:
169696666-169696490
177
LYAM2_HUMAN
490-549
60
0
-
-
1.11
ENST00000333360
11
ENSE00000451043
chr1:
169695947-169695840
108
LYAM2_HUMAN
549-585
37
0
-
-
1.12
ENST00000333360
12
ENSE00000789637
chr1:
169695069-169695048
22
LYAM2_HUMAN
585-592
8
0
-
-
1.13
ENST00000333360
13
ENSE00000814464
chr1:
169694942-169694870
73
LYAM2_HUMAN
592-610
19
0
-
-
1.14a
ENST00000333360
14a
ENSE00000814465
chr1:
169693650-169691782
1869
LYAM2_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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