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1KJ5
Asym. Unit
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Asym.Unit (180 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 1
Authors
:
D. J. Schibli, H. N. Hunter, V. Aseyev, T. D. Starner, J. M. Wiencek, P. B. Mccray Jr. , B. F. Tack, H. J. Vogel
Date
:
04 Dec 01 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Defensin, Antimicrobial Protein, Human Beta-Defensin 1, Beta-Defensin, Hbd1, Antibiotic
(Keyword Search:
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Reference
:
D. J. Schibli, H. N. Hunter, V. Aseyev, T. D. Starner, J. M. Wiencek, P. B. Mccray Jr. , B. F. Tack, H. J. Vogel
The Solution Structures Of The Human Beta-Defensins Lead To A Better Understanding Of The Potent Bactericidal Activity Of Hbd3 Against Staphylococcus Aureus.
J. Biol. Chem. V. 277 8279 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_018405 (V6I, chain A, )
2: VAR_014925 (A16V, chain A, )
3: VAR_014926 (C35S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018405
V
38
I
DEFB1_HUMAN
Polymorphism
2738047
A
V
6
I
2
UniProt
VAR_014925
A
48
V
DEFB1_HUMAN
Polymorphism
1800967
A
A
16
V
3
UniProt
VAR_014926
C
67
S
DEFB1_HUMAN
Polymorphism
1800968
A
C
35
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
(1, 1)
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Exon 1.2 (A:1-36)
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1: Boundary 1.1/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000297439
1
ENSE00001087806
chr8:
6735544-6735319
226
DEFB1_HUMAN
1-21
21
0
-
-
1.2
ENST00000297439
2
ENSE00001087807
chr8:
6728348-6728097
252
DEFB1_HUMAN
21-68
48
1
A:1-36
36
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SCOP Domains
(1, 1)
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1a: SCOP_d1kj5a_ (A:)
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Class
:
Small proteins
(3458)
Fold
:
Defensin-like
(59)
Superfamily
:
Defensin-like
(59)
Family
:
Defensin
(50)
Protein domain
:
Beta-defensin, BD
(13)
Human (Homo sapiens), HBD1 [TaxId: 9606]
(4)
1a
d1kj5a_
A:
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Defensin_beta_1kj5A01 (A:1-36)
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Clan
:
Defensin
(30)
Family
:
Defensin_beta
(14)
Homo sapiens (Human)
(13)
1a
Defensin_beta-1kj5A01
A:1-36
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Chain A
Asymmetric Unit 1
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