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1KJ2
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX
Authors
:
J. -B. Reiser, C. Gregoire, C. Darnault, T. Mosser, A. Guimezanes, A. -M Verhulst, J. C. Fontecilla-Camps, G. Mazza, B. Malissen, D. Housset
Date
:
04 Dec 01 (Deposition) - 27 Mar 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.71
Chains
:
Asym. Unit : A,B,D,E,H,I,L,M,P,Q
Biol. Unit 1: A,B,H,L,P (1x)
Biol. Unit 2: D,E,I,M,Q (1x)
Keywords
:
T Cell Receptor, Class I Mhc, H-2Kb, Tcr-Pmhc Complex, Allogeneic, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Reiser, C. Gregoire, C. Darnault, T. Mosser, A. Guimezanes, A. M. Schmitt-Verhulst, J. C. Fontecilla-Camps, G. Mazza, B. Malissen, D. Housset
A T Cell Receptor Cdr3Beta Loop Undergoes Conformational Changes Of Unprecedented Magnitude Upon Binding To A Peptide/Mhc Class I Complex.
Immunity V. 16 345 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
2
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SIA
1
Ligand/Ion
O-SIALIC ACID
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:6 , PRO A:7 , ASN A:21 , NAG A:202 , SIA A:207
BINDING SITE FOR RESIDUE NAG A 201
02
AC2
SOFTWARE
NAG A:201 , MAN A:203 , MAN A:204 , NAG A:205 , SIA A:207
BINDING SITE FOR RESIDUE NAG A 202
03
AC3
SOFTWARE
NAG A:202 , MAN A:204 , MAN A:208
BINDING SITE FOR RESIDUE MAN A 203
04
AC4
SOFTWARE
NAG A:202 , MAN A:203 , NAG A:205
BINDING SITE FOR RESIDUE MAN A 204
05
AC5
SOFTWARE
NAG A:202 , MAN A:204 , GAL A:206
BINDING SITE FOR RESIDUE NAG A 205
06
AC6
SOFTWARE
ARG A:69 , NAG A:205 , SIA A:207 , HOH A:210
BINDING SITE FOR RESIDUE GAL A 206
07
AC7
SOFTWARE
ASN A:67 , LYS A:72 , NAG A:201 , NAG A:202 , GAL A:206
BINDING SITE FOR RESIDUE SIA A 207
08
AC8
SOFTWARE
MAN A:203
BINDING SITE FOR RESIDUE MAN A 208
09
AC9
SOFTWARE
ASP B:64 , ASN B:81
BINDING SITE FOR RESIDUE NAG B 301
10
BC1
SOFTWARE
ASP E:64 , ASN E:81
BINDING SITE FOR RESIDUE NAG E 401
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain L/M, )
2: VAR_B2MG_MOUSE_003 (K44E, chain L/M, )
3: VAR_B2MG_MOUSE_004 (R81T, chain L/M, )
4: VAR_B2MG_MOUSE_005 (D85D, chain L/M, )
5: VAR_B2MG_MOUSE_006 (D85V, chain L/M, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
L/M
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
L/M
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
L/M
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
L/M
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
L/M
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:78-84,M:78-84,H:257-263,I:257-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
2
L:78-84
M:78-84
HA1B_MOUSE
278-284
2
H:257-263
I:257-263
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Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 10)
Info
All SCOP Domains
1a: SCOP_d1kj2l_ (L:)
1b: SCOP_d1kj2m_ (M:)
2a: SCOP_d1kj2h1 (H:182-276)
2b: SCOP_d1kj2i1 (I:182-277)
3a: SCOP_d1kj2a_ (A:)
3b: SCOP_d1kj2d_ (D:)
4a: SCOP_d1kj2b_ (B:)
4b: SCOP_d1kj2e_ (E:)
5a: SCOP_d1kj2h2 (H:1-181)
5b: SCOP_d1kj2i2 (I:1-181)
View:
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Classes
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(
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(
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d1kj2l_
L:
1b
d1kj2m_
M:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1kj2h1
H:182-276
2b
d1kj2i1
I:182-277
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(21)
3a
d1kj2a_
A:
3b
d1kj2d_
D:
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(28)
4a
d1kj2b_
B:
4b
d1kj2e_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2KB [TaxId: 10090]
(42)
5a
d1kj2h2
H:1-181
5b
d1kj2i2
I:1-181
[
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]
CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_1kj2H01 (H:1-181)
1b: CATH_1kj2I01 (I:1-181)
2a: CATH_1kj2L00 (L:1-99)
2b: CATH_1kj2M00 (M:1-99)
2c: CATH_1kj2A00 (A:1-116)
2d: CATH_1kj2D00 (D:1-116)
2e: CATH_1kj2B00 (B:1-116A)
2f: CATH_1kj2E00 (E:1-116A)
2g: CATH_1kj2H02 (H:182-274)
2h: CATH_1kj2I02 (I:182-274)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1kj2H01
H:1-181
1b
1kj2I01
I:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1kj2L00
L:1-99
2b
1kj2M00
M:1-99
2c
1kj2A00
A:1-116
2d
1kj2D00
D:1-116
2e
1kj2B00
B:1-116A
2f
1kj2E00
E:1-116A
2g
1kj2H02
H:182-274
2h
1kj2I02
I:182-274
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
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Asym.Unit (215 KB)
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