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1KJ1
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE
Authors
:
G. Ramachandraiah, N. R. Chandra, A. Surolia, M. Vijayan
Date
:
04 Dec 01 (Deposition) - 22 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,D,P,Q
Biol. Unit 1: A,D (1x)
Biol. Unit 2: P,Q (1x)
Keywords
:
Bulb Lectin, Mannose, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Ramachandraiah, N. R. Chandra, A. Surolia, M. Vijayan
Re-Refinement Using Reprocessed Data To Improve The Quality Of The Structure: A Case Study Involving Garlic Lectin.
Acta Crystallogr. , Sect. D V. 58 414 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
1e: ALPHA-D-MANNOSE (MANe)
1f: ALPHA-D-MANNOSE (MANf)
1g: ALPHA-D-MANNOSE (MANg)
1h: ALPHA-D-MANNOSE (MANh)
1i: ALPHA-D-MANNOSE (MANi)
1j: ALPHA-D-MANNOSE (MANj)
1k: ALPHA-D-MANNOSE (MANk)
1l: ALPHA-D-MANNOSE (MANl)
1m: ALPHA-D-MANNOSE (MANm)
1n: ALPHA-D-MANNOSE (MANn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAN
14
Ligand/Ion
ALPHA-D-MANNOSE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:90 , ASP A:92 , ASN A:94 , TYR A:98 , ASN D:84 , ASP D:101 , SER D:104
BINDING SITE FOR RESIDUE MAN A 300
02
AC2
SOFTWARE
GLN A:58 , ASP A:60 , ASN A:62 , TYR A:66 , SER A:72 , HIS A:77
BINDING SITE FOR RESIDUE MAN A 301
03
AC3
SOFTWARE
GLN A:26 , ASP A:28 , ASN A:30 , TYR A:34 , HOH A:421 , HOH D:563
BINDING SITE FOR RESIDUE MAN A 302
04
AC4
SOFTWARE
TYR A:21 , ASP A:35 , THR A:38 , SER A:39 , VAL A:40 , GLY A:93 , THR D:107 , LYS D:109
BINDING SITE FOR RESIDUE MAN A 303
05
AC5
SOFTWARE
ASN A:84 , ASP A:101 , SER A:104 , TYR A:108 , GLN D:90 , ASP D:92 , ASN D:94 , TYR D:98
BINDING SITE FOR RESIDUE MAN D 304
06
AC6
SOFTWARE
GLN D:58 , ASP D:60 , ASN D:62 , TYR D:66 , SER D:72 , HOH D:514
BINDING SITE FOR RESIDUE MAN D 305
07
AC7
SOFTWARE
GLN D:26 , ASP D:28 , ASN D:30 , TYR D:34 , ASP D:46 , HOH D:407 , LYS P:50 , ARG P:71
BINDING SITE FOR RESIDUE MAN D 306
08
AC8
SOFTWARE
GLN P:90 , ASP P:92 , ASN P:94 , TYR P:98 , MET Q:5 , ASN Q:84 , ASP Q:101 , HOH Q:417
BINDING SITE FOR RESIDUE MAN P 307
09
AC9
SOFTWARE
GLN P:58 , ASP P:60 , ASN P:62 , TYR P:66
BINDING SITE FOR RESIDUE MAN P 308
10
BC1
SOFTWARE
GLN P:26 , ASP P:28 , ASN P:30 , TYR P:34 , SER P:39 , ALA Q:68 , GLU Q:69 , HOH Q:544
BINDING SITE FOR RESIDUE MAN P 309
11
BC2
SOFTWARE
TYR P:21 , LEU P:33 , ASP P:35 , VAL P:40 , GLY P:93 , HOH P:438 , ALA Q:12 , GLY Q:13 , THR Q:107 , LYS Q:109
BINDING SITE FOR RESIDUE MAN P 310
12
BC3
SOFTWARE
ASN P:84 , ASP P:101 , TYR P:108 , GLN Q:90 , ASP Q:92 , ASN Q:94 , TYR Q:98 , HOH Q:486
BINDING SITE FOR RESIDUE MAN Q 311
13
BC4
SOFTWARE
GLN Q:58 , ASP Q:60 , ASN Q:62 , TYR Q:66 , SER Q:72 , HOH Q:441
BINDING SITE FOR RESIDUE MAN Q 312
14
BC5
SOFTWARE
ILE A:47 , LYS A:50 , ARG A:71 , GLN Q:26 , ASP Q:28 , ASN Q:30 , TYR Q:34 , ASP Q:46 , HOH Q:449
BINDING SITE FOR RESIDUE MAN Q 313
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1kj1a_ (A:)
1b: SCOP_d1kj1d_ (D:)
1c: SCOP_d1kj1p_ (P:)
1d: SCOP_d1kj1q_ (Q:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism II
(19)
Superfamily
:
alpha-D-mannose-specific plant lectins
(19)
Family
:
alpha-D-mannose-specific plant lectins
(12)
Protein domain
:
Lectin (agglutinin)
(8)
Garlic (Allium sativum) [TaxId: 4682]
(2)
1a
d1kj1a_
A:
1b
d1kj1d_
D:
1c
d1kj1p_
P:
1d
d1kj1q_
Q:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1kj1A00 (A:1-109)
1b: CATH_1kj1P00 (P:1-109)
1c: CATH_1kj1D00 (D:1-109)
1d: CATH_1kj1Q00 (Q:1-109)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Orthogonal Prism
(16)
Topology
:
Agglutinin, subunit A
(16)
Homologous Superfamily
:
Agglutinin, subunit A
(16)
Garlic (Allium sativum)
(2)
1a
1kj1A00
A:1-109
1b
1kj1P00
P:1-109
1c
1kj1D00
D:1-109
1d
1kj1Q00
Q:1-109
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_B_lectin_1kj1Q01 (Q:1-109)
1b: PFAM_B_lectin_1kj1Q02 (Q:1-109)
1c: PFAM_B_lectin_1kj1P01 (P:5-108)
1d: PFAM_B_lectin_1kj1P02 (P:5-108)
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Clan
:
no clan defined [family: B_lectin]
(7)
Family
:
B_lectin
(7)
Allium sativum (Garlic)
(1)
1a
B_lectin-1kj1Q01
Q:1-109
1b
B_lectin-1kj1Q02
Q:1-109
1c
B_lectin-1kj1P01
P:5-108
1d
B_lectin-1kj1P02
P:5-108
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (83 KB)
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