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1KIL
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
THREE-DIMENSIONAL STRUCTURE OF THE COMPLEXIN/SNARE COMPLEX
Authors
:
X. Chen, D. Tomchick, E. Kovrigin, D. Arac, M. Machius, T. C. Sudhof, J. Rizo
Date
:
03 Dec 01 (Deposition) - 13 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Helix Bound To Four Helix Bundle, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Chen, D. R. Tomchick, E. Kovrigin, D. Arac, M. Machius, T. C. Sudhof, J. Rizo
Three-Dimensional Structure Of The Complexin/Snare Complex.
Neuron V. 33 397 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:68 , HOH A:302 , HOH A:303 , HOH A:304 , HOH B:2 , HOH B:4
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
HOH C:303 , HOH C:304 , HOH C:305 , HOH C:306 , HOH D:6 , HOH D:8 , HOH D:10
BINDING SITE FOR RESIDUE MG C 302
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_073698 (I67N, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073698
I
67
N
SNP25_HUMAN
Disease (CMS18)
---
C
I
67
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-81|D:141-202,B:192-250)
2: V_SNARE (A:31-91)
3: SYNAPTOBREVIN (A:49-68)
4: SYNTAXIN (B:198-237)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_HUMAN
19-81
140-202
2
C:19-81
D:141-202
STX1A_RAT
192-254
1
B:192-250
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
1
A:31-91
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
1
A:49-68
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
1
B:198-237
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.8 (B:192-226)
Exon 1.9 (B:227-250)
Exon 2.3 (E:32-69)
Exon 2.4b (E:70-72)
Exon 3.3a (C:10-24 | -)
Exon 3.4a (C:25-38 | -)
Exon 3.5 (C:39-55 | -)
Exon 3.7 (C:55-81 | -)
Exon 3.9 (- | D:140-184)
Exon 3.10 (- | D:185-204)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.7/1.8
02: Boundary 1.8/1.9
03: Boundary 1.9/1.10
04: Boundary 2.1/2.3
05: Boundary 2.3/2.4b
06: Boundary 2.4b/-
07: Boundary 3.1a/3.3a
08: Boundary 3.3a/3.4a
09: Boundary 3.4a/3.5
10: Boundary 3.5/3.7
11: Boundary 3.7/3.8b
12: Boundary 3.8b/3.9
13: Boundary 3.9/3.10
14: Boundary 3.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
1
B:192-226
35
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
1
B:227-250
24
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
2.1
ENSRNOT00000061720
1
ENSRNOE00000417959
chr14:
1732344-1732448
105
CPLX1_RAT
1-11
11
0
-
-
2.3
ENSRNOT00000061720
3
ENSRNOE00000000385
chr14:
1755553-1755728
176
CPLX1_RAT
11-69
59
1
E:32-69
38
2.4b
ENSRNOT00000061720
4b
ENSRNOE00000417958
chr14:
1761386-1763171
1786
CPLX1_RAT
70-134
65
1
E:70-72
3
3.1a
ENST00000254976
1a
ENSE00001206321
chr20:
10199478-10199625
148
SNP25_HUMAN
-
0
0
-
-
3.3a
ENST00000254976
3a
ENSE00001229068
chr20:
10256077-10256211
135
SNP25_HUMAN
1-24
24
1
C:10-24
-
15
-
3.4a
ENST00000254976
4a
ENSE00001017161
chr20:
10258333-10258374
42
SNP25_HUMAN
25-38
14
1
C:25-38
-
14
-
3.5
ENST00000254976
5
ENSE00000906745
chr20:
10265372-10265420
49
SNP25_HUMAN
39-55
17
1
C:39-55
-
17
-
3.7
ENST00000254976
7
ENSE00002191142
chr20:
10273809-10273926
118
SNP25_HUMAN
55-94
40
1
C:55-81
-
27
-
3.8b
ENST00000254976
8b
ENSE00000906747
chr20:
10277573-10277698
126
SNP25_HUMAN
94-136
43
0
-
-
3.9
ENST00000254976
9
ENSE00000906748
chr20:
10279916-10280060
145
SNP25_HUMAN
136-184
49
1
-
D:140-184
-
45
3.10
ENST00000254976
10
ENSE00001937220
chr20:
10286777-10288066
1290
SNP25_HUMAN
185-206
22
1
-
D:185-204
-
20
[
close EXON info
]
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d1kile_ (E:)
2a: SCOP_d1kila_ (A:)
3a: SCOP_d1kilc_ (C:)
3b: SCOP_d1kild_ (D:)
4a: SCOP_d1kilb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
Complexin
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1kile_
E:
Protein domain
:
Synaptobrevin
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
2a
d1kila_
A:
Protein domain
:
Synaptosomal-associated protein SNAP-25
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1kilc_
C:
3b
d1kild_
D:
Protein domain
:
Syntaxin 1A
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
4a
d1kilb_
B:
[
close SCOP info
]
CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1kilD00 (D:139-204)
1b: CATH_1kilC00 (C:10-81)
1c: CATH_1kilB00 (B:192-250)
1d: CATH_1kilA00 (A:28-92)
2a: CATH_1kilE00 (E:32-72)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Norway rat (Rattus norvegicus)
(5)
1a
1kilD00
D:139-204
1b
1kilC00
C:10-81
1c
1kilB00
B:192-250
1d
1kilA00
A:28-92
Homologous Superfamily
:
Single Helix bin
(1)
Norway rat (Rattus norvegicus)
(1)
2a
1kilE00
E:32-72
[
close CATH info
]
Pfam Domains
(5, 5)
Info
all PFAM domains
1a: PFAM_SNARE_1kilD01 (D:145-203)
2a: PFAM_SNARE_1kilB01 (B:197-250)
3a: PFAM_Synaptobrevin_1kilA01 (A:28-92)
4a: PFAM_SNAP_25_1kilD02 (D:141-141)
5a: PFAM_Synaphin_1kilE01 (E:32-72)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SNARE-fusion
(10)
Family
:
SNARE
(6)
Homo sapiens (Human)
(3)
1a
SNARE-1kilD01
D:145-203
Rattus norvegicus (Rat)
(3)
2a
SNARE-1kilB01
B:197-250
Family
:
Synaptobrevin
(7)
Rattus norvegicus (Rat)
(4)
3a
Synaptobrevin-1kilA01
A:28-92
Clan
:
no clan defined [family: SNAP-25]
(2)
Family
:
SNAP-25
(2)
Homo sapiens (Human)
(1)
4a
SNAP-25-1kilD02
D:141-141
Clan
:
no clan defined [family: Synaphin]
(1)
Family
:
Synaphin
(1)
Rattus norvegicus (Rat)
(1)
5a
Synaphin-1kilE01
E:32-72
[
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]
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