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Getting 'Exon' information from database.
1KIG
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
BOVINE FACTOR XA
Authors
:
A. Wei, R. Alexander, C. -H. Chang
Date
:
24 Apr 97 (Deposition) - 28 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Glycoprotein, Serine Protease, Plasma, Blood Coagulation, Complex (Protease/Inhibitor)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Wei, R. S. Alexander, J. Duke, H. Ross, S. A. Rosenfeld, C. H. Chang
Unexpected Binding Mode Of Tick Anticoagulant Peptide Complexed To Bovine Factor Xa.
J. Mol. Biol. V. 283 147 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_2 (-|L:409-424)
2: TRYPSIN_DOM (H:16-243)
3: TRYPSIN_HIS (H:53-58)
4: TRYPSIN_SER (H:189-200)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
FA10_BOVIN
110-121
149-164
1
-
L:409-424
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA10_BOVIN
234-466
1
H:16-243
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA10_BOVIN
271-276
1
H:53-58
4
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA10_BOVIN
412-423
1
H:189-200
[
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]
Exons
(4, 5)
Info
All Exons
Exon 1.5 (- | L:389-428)
Exon 1.6 (H:16-30 | L:428-439)
Exon 1.7 (H:31-69 | -)
Exon 1.8 (H:69-251 (gaps) | -)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000021789
1
ENSBTAE00000377900
chr12:
84664833-84664902
70
FA10_BOVIN
1-24
24
0
-
-
1.2
ENSBTAT00000021789
2
ENSBTAE00000278163
chr12:
84666990-84667150
161
FA10_BOVIN
24-77
54
0
-
-
1.3
ENSBTAT00000021789
3
ENSBTAE00000177940
chr12:
84671119-84671143
25
FA10_BOVIN
78-86
9
0
-
-
1.4
ENSBTAT00000021789
4
ENSBTAE00000177941
chr12:
84672093-84672206
114
FA10_BOVIN
86-124
39
0
-
-
1.5
ENSBTAT00000021789
5
ENSBTAE00000425962
chr12:
84673472-84673603
132
FA10_BOVIN
124-168
45
1
-
L:389-428
-
40
1.6
ENSBTAT00000021789
6
ENSBTAE00000408790
chr12:
84675374-84675615
242
FA10_BOVIN
168-248
81
2
H:16-30
L:428-439
15
12
1.7
ENSBTAT00000021789
7
ENSBTAE00000412504
chr12:
84676748-84676865
118
FA10_BOVIN
249-288
40
1
H:31-69
-
40
-
1.8
ENSBTAT00000021789
8
ENSBTAE00000414972
chr12:
84677559-84678217
659
FA10_BOVIN
288-492
205
1
H:69-251 (gaps)
-
189
-
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1kigh_ (H:)
2a: SCOP_d1kigi_ (I:)
3a: SCOP_d1kigl_ (L:)
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(
)
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)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Coagulation factor Xa, protease domain
(48)
Cow (Bos taurus) [TaxId: 9913]
(1)
1a
d1kigh_
H:
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Soft tick anticoagulant proteins
(5)
Protein domain
:
Anticoagulant protein, factor Xa inhibitor
(4)
Soft tick (Ornithodoros moubata) [TaxId: 6938]
(4)
2a
d1kigi_
I:
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Factor X, N-terminal module
(81)
Cow (Bos taurus) [TaxId: 9913]
(5)
3a
d1kigl_
L:
[
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1kigI00 (I:501-560)
2a: CATH_1kigH01 (H:16-27,H:121-232)
2b: CATH_1kigH02 (H:28-120,H:233-246)
3a: CATH_1kigL00 (L:389-439)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Factor Xa Inhibitor
(116)
Homologous Superfamily
:
Factor Xa Inhibitor
(116)
Cattle (Bos taurus)
(61)
1a
1kigI00
I:501-560
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
2a
1kigH01
H:16-27,H:121-232
2b
1kigH02
H:28-120,H:233-246
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Cattle (Bos taurus)
(4)
3a
1kigL00
L:389-439
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Trypsin_1kigH01 (H:16-238)
2a: PFAM_Kunitz_BPTI_1kigI01 (I:504-560)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Bos taurus (Bovine)
(190)
1a
Trypsin-1kigH01
H:16-238
Clan
:
Protease_inhib
(47)
Family
:
Kunitz_BPTI
(45)
Ornithodoros moubata (Soft tick) (Argasid tick)
(4)
2a
Kunitz_BPTI-1kigI01
I:504-560
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Nucleic
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Chain I
Chain L
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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