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1KIF
Biol. Unit 2
Info
Asym.Unit (465 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (120 KB)
Biol.Unit 3 (119 KB)
Biol.Unit 4 (119 KB)
Biol.Unit 5 (230 KB)
Biol.Unit 6 (231 KB)
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(1)
Title
:
D-AMINO ACID OXIDASE FROM PIG KIDNEY
Authors
:
F. Todone, A. Mattevi
Date
:
19 Jan 96 (Deposition) - 11 Jul 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: C,D,G,H (1x)
Biol. Unit 6: A,B,E,F (1x)
Keywords
:
Fad Cofactor, Oxidase, Flavoenzyme, Flavoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mattevi, M. A. Vanoni, F. Todone, M. Rizzi, A. Teplyakov, A. Coda, M. Bolognesi, B. Curti
Crystal Structure Of D-Amino Acid Oxidase: A Case Of Active Site Mirror-Image Convergent Evolution With Flavocytochrome B2.
Proc. Natl. Acad. Sci. Usa V. 93 7496 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
1b: BENZOIC ACID (BEZb)
1c: BENZOIC ACID (BEZc)
1d: BENZOIC ACID (BEZd)
1e: BENZOIC ACID (BEZe)
1f: BENZOIC ACID (BEZf)
1g: BENZOIC ACID (BEZg)
1h: BENZOIC ACID (BEZh)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
2f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
2g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
2h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEZ
2
Ligand/Ion
BENZOIC ACID
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY B:7 , ALA B:8 , GLY B:9 , VAL B:10 , ILE B:11 , ALA B:36 , ASP B:37 , ARG B:38 , THR B:43 , THR B:44 , THR B:45 , ALA B:48 , ALA B:49 , GLY B:50 , LEU B:51 , ARG B:162 , LYS B:163 , VAL B:164 , CYS B:181 , THR B:182 , TRP B:185 , GLY B:281 , ARG B:283 , GLY B:312 , GLY B:313 , TYR B:314 , GLY B:315 , LEU B:316 , THR B:317 , BEZ B:349 , HOH B:350 , HOH B:355 , HOH B:357
BINDING SITE FOR RESIDUE FAD B 348
2
AC4
SOFTWARE
TYR B:224 , TYR B:228 , ARG B:283 , GLY B:313 , FAD B:348
BINDING SITE FOR RESIDUE BEZ B 349
3
BC2
SOFTWARE
GLY F:7 , ALA F:8 , GLY F:9 , VAL F:10 , ILE F:11 , ALA F:36 , ASP F:37 , ARG F:38 , THR F:43 , THR F:44 , THR F:45 , ALA F:48 , ALA F:49 , GLY F:50 , LEU F:51 , ARG F:162 , LYS F:163 , VAL F:164 , CYS F:181 , THR F:182 , TRP F:185 , GLY F:281 , ARG F:283 , GLY F:312 , GLY F:313 , TYR F:314 , GLY F:315 , LEU F:316 , THR F:317 , BEZ F:349 , HOH F:352 , HOH F:360 , HOH F:372
BINDING SITE FOR RESIDUE FAD F 348
4
BC3
SOFTWARE
TYR F:224 , TYR F:228 , ARG F:283 , GLY F:313 , FAD F:348
BINDING SITE FOR RESIDUE BEZ F 349
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DAO (B:305-323,F:305-323)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAO
PS00677
D-amino acid oxidases signature.
OXDA_PIG
305-323
2
-
B:305-323
-
-
-
F:305-323
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1kifa2 (A:195-287)
1b: SCOP_d1kifg2 (G:195-287)
1c: SCOP_d1kifh2 (H:195-287)
1d: SCOP_d1kifb2 (B:195-287)
1e: SCOP_d1kifc2 (C:195-287)
1f: SCOP_d1kifd2 (D:195-287)
1g: SCOP_d1kife2 (E:195-287)
1h: SCOP_d1kiff2 (F:195-287)
2a: SCOP_d1kifa1 (A:1-194,A:288-339)
2b: SCOP_d1kifg1 (G:1-194,G:288-339)
2c: SCOP_d1kifh1 (H:1-194,H:288-339)
2d: SCOP_d1kifb1 (B:1-194,B:288-339)
2e: SCOP_d1kifc1 (C:1-194,C:288-339)
2f: SCOP_d1kifd1 (D:1-194,D:288-339)
2g: SCOP_d1kife1 (E:1-194,E:288-339)
2h: SCOP_d1kiff1 (F:1-194,F:288-339)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
D-aminoacid oxidase
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
1a
d1kifa2
A:195-287
1b
d1kifg2
G:195-287
1c
d1kifh2
H:195-287
1d
d1kifb2
B:195-287
1e
d1kifc2
C:195-287
1f
d1kifd2
D:195-287
1g
d1kife2
E:195-287
1h
d1kiff2
F:195-287
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-binding domain
(33)
Superfamily
:
Nucleotide-binding domain
(33)
Family
:
D-aminoacid oxidase, N-terminal domain
(10)
Protein domain
:
D-aminoacid oxidase, N-terminal domain
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
2a
d1kifa1
A:1-194,A:288-339
2b
d1kifg1
G:1-194,G:288-339
2c
d1kifh1
H:1-194,H:288-339
2d
d1kifb1
B:1-194,B:288-339
2e
d1kifc1
C:1-194,C:288-339
2f
d1kifd1
D:1-194,D:288-339
2g
d1kife1
E:1-194,E:288-339
2h
d1kiff1
F:1-194,F:288-339
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1kifA02 (A:89-139,A:196-285)
1b: CATH_1kifE02 (E:89-139,E:196-285)
1c: CATH_1kifF02 (F:89-139,F:196-285)
1d: CATH_1kifG02 (G:89-139,G:196-285)
1e: CATH_1kifH02 (H:89-139,H:196-285)
1f: CATH_1kifB02 (B:89-139,B:196-285)
1g: CATH_1kifC02 (C:89-139,C:196-285)
1h: CATH_1kifD02 (D:89-139,D:196-285)
2a: CATH_1kifA01 (A:1-88,A:140-195,A:286-339)
2b: CATH_1kifB01 (B:1-88,B:140-195,B:286-339)
2c: CATH_1kifC01 (C:1-88,C:140-195,C:286-339)
2d: CATH_1kifD01 (D:1-88,D:140-195,D:286-339)
2e: CATH_1kifE01 (E:1-88,E:140-195,E:286-339)
2f: CATH_1kifF01 (F:1-88,F:140-195,F:286-339)
2g: CATH_1kifG01 (G:1-88,G:140-195,G:286-339)
2h: CATH_1kifH01 (H:1-88,H:140-195,H:286-339)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Pig (Sus scrofa)
(6)
1a
1kifA02
A:89-139,A:196-285
1b
1kifE02
E:89-139,E:196-285
1c
1kifF02
F:89-139,F:196-285
1d
1kifG02
G:89-139,G:196-285
1e
1kifH02
H:89-139,H:196-285
1f
1kifB02
B:89-139,B:196-285
1g
1kifC02
C:89-139,C:196-285
1h
1kifD02
D:89-139,D:196-285
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pig (Sus scrofa)
(21)
2a
1kifA01
A:1-88,A:140-195,A:286-339
2b
1kifB01
B:1-88,B:140-195,B:286-339
2c
1kifC01
C:1-88,C:140-195,C:286-339
2d
1kifD01
D:1-88,D:140-195,D:286-339
2e
1kifE01
E:1-88,E:140-195,E:286-339
2f
1kifF01
F:1-88,F:140-195,F:286-339
2g
1kifG01
G:1-88,G:140-195,G:286-339
2h
1kifH01
H:1-88,H:140-195,H:286-339
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_DAO_1kifH01 (H:2-329)
1b: PFAM_DAO_1kifH02 (H:2-329)
1c: PFAM_DAO_1kifH03 (H:2-329)
1d: PFAM_DAO_1kifH04 (H:2-329)
1e: PFAM_DAO_1kifH05 (H:2-329)
1f: PFAM_DAO_1kifH06 (H:2-329)
1g: PFAM_DAO_1kifH07 (H:2-329)
1h: PFAM_DAO_1kifH08 (H:2-329)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
DAO
(25)
Sus scrofa (Pig)
(1)
1a
DAO-1kifH01
H:2-329
1b
DAO-1kifH02
H:2-329
1c
DAO-1kifH03
H:2-329
1d
DAO-1kifH04
H:2-329
1e
DAO-1kifH05
H:2-329
1f
DAO-1kifH06
H:2-329
1g
DAO-1kifH07
H:2-329
1h
DAO-1kifH08
H:2-329
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