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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1KI0
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
THE X-RAY STRUCTURE OF HUMAN ANGIOSTATIN
Authors
:
M. C. Abad, R. K. Arni, D. K. Grella, F. J. Castellino, A. Tulinsky, J. H. Geiger
Date
:
02 Dec 01 (Deposition) - 29 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kringle Domains, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Abad, R. K. Arni, D. K. Grella, F. J. Castellino, A. Tulinsky, J. H. Geiger
The X-Ray Crystallographic Structure Of The Angiogenesis Inhibitor Angiostatin.
J. Mol. Biol. V. 318 1009 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: BICINE (BCNa)
1b: BICINE (BCNb)
1c: BICINE (BCNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCN
3
Ligand/Ion
BICINE
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:115 , HIS A:198 , GLY A:199 , ILE A:201 , GLU A:221 , TRP A:225 , PHE A:227 , ARG A:234 , TRP A:235 , HOH A:548 , HOH A:571 , HOH A:636
BINDING SITE FOR RESIDUE BCN A 335
2
AC2
SOFTWARE
ARG A:117 , ASP A:137 , ASP A:139 , TRP A:144 , ARG A:153 , TYR A:154 , THR A:287 , HOH A:711 , HOH A:725
BINDING SITE FOR RESIDUE BCN A 336
3
AC3
SOFTWARE
ARG A:290 , LYS A:311 , TRP A:315 , HIS A:317 , ARG A:324 , TRP A:325 , HOH A:516 , HOH A:839
BINDING SITE FOR RESIDUE BCN A 337
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016288 (H114Q, chain A, )
2: VAR_033653 (R115K, chain A, )
3: VAR_018658 (L128P, chain A, )
4: VAR_018659 (R216H, chain A, )
5: VAR_016289 (R242H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016288
H
133
Q
PLMN_HUMAN
Polymorphism
4252186
A
H
114
Q
2
UniProt
VAR_033653
R
134
K
PLMN_HUMAN
Polymorphism
2817
A
R
115
K
3
UniProt
VAR_018658
L
147
P
PLMN_HUMAN
Disease (PLGD)
---
A
L
128
P
4
UniProt
VAR_018659
R
235
H
PLMN_HUMAN
Disease (PLGD)
---
A
R
216
H
5
UniProt
VAR_016289
R
261
H
PLMN_HUMAN
Polymorphism
4252187
A
R
242
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_2 (A:83-162|A:165-243|A:255-333|-|-)
2: KRINGLE_1 (A:132-145|A:214-226|A:304-316|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_2
PS50070
Kringle domain profile.
PLMN_HUMAN
102-181
184-262
274-352
376-454
480-560
3
A:83-162
A:165-243
A:255-333
-
-
2
KRINGLE_1
PS00021
Kringle domain signature.
PLMN_HUMAN
151-164
233-245
323-335
425-437
530-543
3
A:132-145
A:214-226
A:304-316
-
-
[
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]
Exons
(6, 6)
Info
All Exons
Exon 1.4a (A:81-117)
Exon 1.5b (A:117-164)
Exon 1.6 (A:164-204)
Exon 1.7 (A:204-244)
Exon 1.8 (A:244-298)
Exon 1.9 (A:298-333)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.4a
2: Boundary 1.4a/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308192
1b
ENSE00001900502
chr6:
161123274-161123385
112
PLMN_HUMAN
1-17
17
0
-
-
1.2d
ENST00000308192
2d
ENSE00002186994
chr6:
161127439-161127574
136
PLMN_HUMAN
17-62
46
0
-
-
1.3a
ENST00000308192
3a
ENSE00002162767
chr6:
161128732-161128838
107
PLMN_HUMAN
62-98
37
0
-
-
1.4a
ENST00000308192
4a
ENSE00002147931
chr6:
161132109-161132223
115
PLMN_HUMAN
98-136
39
1
A:81-117
37
1.5b
ENST00000308192
5b
ENSE00002160428
chr6:
161134018-161134157
140
PLMN_HUMAN
136-183
48
1
A:117-164
48
1.6
ENST00000308192
6
ENSE00002153394
chr6:
161135826-161135946
121
PLMN_HUMAN
183-223
41
1
A:164-204
41
1.7
ENST00000308192
7
ENSE00002185478
chr6:
161137677-161137795
119
PLMN_HUMAN
223-263
41
1
A:204-244
41
1.8
ENST00000308192
8
ENSE00002162125
chr6:
161139326-161139488
163
PLMN_HUMAN
263-317
55
1
A:244-298
55
1.9
ENST00000308192
9
ENSE00002174772
chr6:
161139725-161139870
146
PLMN_HUMAN
317-366
50
1
A:298-333
36
1.10
ENST00000308192
10
ENSE00002171287
chr6:
161143440-161143599
160
PLMN_HUMAN
366-419
54
0
-
-
1.11c
ENST00000308192
11c
ENSE00002163078
chr6:
161152083-161152264
182
PLMN_HUMAN
419-480
62
0
-
-
1.12b
ENST00000308192
12b
ENSE00002160674
chr6:
161152777-161152925
149
PLMN_HUMAN
480-529
50
0
-
-
1.13
ENST00000308192
13
ENSE00002175196
chr6:
161155027-161155120
94
PLMN_HUMAN
530-561
32
0
-
-
1.14
ENST00000308192
14
ENSE00002152595
chr6:
161157919-161158039
121
PLMN_HUMAN
561-601
41
0
-
-
1.15b
ENST00000308192
15b
ENSE00002177616
chr6:
161159570-161159644
75
PLMN_HUMAN
601-626
26
0
-
-
1.16
ENST00000308192
16
ENSE00002172545
chr6:
161160100-161160240
141
PLMN_HUMAN
626-673
48
0
-
-
1.17b
ENST00000308192
17b
ENSE00002178747
chr6:
161162343-161162449
107
PLMN_HUMAN
673-709
37
0
-
-
1.18b
ENST00000308192
18b
ENSE00002181703
chr6:
161173147-161173292
146
PLMN_HUMAN
709-757
49
0
-
-
1.19b
ENST00000308192
19b
ENSE00001864790
chr6:
161173932-161174338
407
PLMN_HUMAN
758-810
53
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ki0a1 (A:81-163)
1b: SCOP_d1ki0a2 (A:164-250)
1c: SCOP_d1ki0a3 (A:251-333)
View:
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)
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Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Plasminogen
(20)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d1ki0a1
A:81-163
1b
d1ki0a2
A:164-250
1c
d1ki0a3
A:251-333
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1ki0A03 (A:251-333)
1b: CATH_1ki0A01 (A:81-162)
1c: CATH_1ki0A02 (A:163-250)
View:
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Label:
Classes
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
1ki0A03
A:251-333
1b
1ki0A01
A:81-162
1c
1ki0A02
A:163-250
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Kringle_1ki0A01 (A:256-333)
1b: PFAM_Kringle_1ki0A02 (A:256-333)
1c: PFAM_Kringle_1ki0A03 (A:256-333)
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Kringle]
(26)
Family
:
Kringle
(26)
Homo sapiens (Human)
(19)
1a
Kringle-1ki0A01
A:256-333
1b
Kringle-1ki0A02
A:256-333
1c
Kringle-1ki0A03
A:256-333
[
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Asymmetric Unit 1
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