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1KHV
Biol. Unit 2
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Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RABBIT HEMORRHAGIC DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE COMPLEXED WITH LU3+
Authors
:
K. K. Ng, M. M. Cherney, A. L. Vazquez, A. Machin, J. M. Alonso, F. Parra, M
Date
:
01 Dec 01 (Deposition) - 16 Jan 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rna-Dependent Rna Polymerase, Transferase
(Keyword Search:
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Reference
:
K. K. Ng, M. M. Cherney, A. L. Vazquez, A. Machin, J. M. Alonso, F. Parra, M. N. James
Crystal Structures Of Active And Inactive Conformations Of Caliciviral Rna-Dependent Rna Polymerase.
J. Biol. Chem. V. 277 1381 2002
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Hetero Components
(0, 0)
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All Hetero Components
1a: LUTETIUM (III) ION (LUa)
1b: LUTETIUM (III) ION (LUb)
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Sites
(1, 1)
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All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LEU B:249 , ASP B:355 , GLY B:356
BINDING SITE FOR RESIDUE LU B 517
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
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1: RDRP_SSRNA_POS (B:244-368)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_RHDVF
1495-1619
1
-
B:244-368
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1khva_ (A:)
1b: SCOP_d1khvb_ (B:)
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Protein Domains
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Rabbit hemorrhagic disease virus [TaxId: 11976]
(2)
1a
d1khva_
A:
1b
d1khvb_
B:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1khvA03 (A:220-251,A:306-403)
1b: CATH_1khvB03 (B:220-251,B:306-403)
2a: CATH_1khvA01 (A:5-63)
2b: CATH_1khvB01 (B:5-63)
3a: CATH_1khvA05 (A:404-500)
3b: CATH_1khvB05 (B:404-500)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Rabbit hemorrhagic disease virus. Organism_taxid: 11976.
(2)
1a
1khvA03
A:220-251,A:306-403
1b
1khvB03
B:220-251,B:306-403
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Luciferase; domain 5
(3)
Homologous Superfamily
:
DNA/RNA polymerases
(2)
Rabbit hemorrhagic disease virus. Organism_taxid: 11976.
(2)
2a
1khvA01
A:5-63
2b
1khvB01
B:5-63
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Mitochondrial Import Receptor Subunit Tom20; Chain A
(25)
Homologous Superfamily
:
[code=1.20.960.20, no name defined]
(24)
Rabbit hemorrhagic disease virus. Organism_taxid: 11976.
(2)
3a
1khvA05
A:404-500
3b
1khvB05
B:404-500
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RdRP_1_1khvB01 (B:29-501)
1b: PFAM_RdRP_1_1khvB02 (B:29-501)
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Clan
:
RdRP
(210)
Family
:
RdRP_1
(44)
Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) (Ra/LV/RHDV/GH/1989/GE) (RHDV-FRG)
(2)
1a
RdRP_1-1khvB01
B:29-501
1b
RdRP_1-1khvB02
B:29-501
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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