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1KH1
Asym. Unit
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Asym.Unit (259 KB)
Biol.Unit 1 (254 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS HB8 ARGININOSUCCINATE SYNTHETASE
Authors
:
M. Goto, Y Nakajima, K. Hirotsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 Nov 01 (Deposition) - 03 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ligase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. Goto, Y. Nakajima, K. Hirotsu
Crystal Structure Of Argininosuccinate Synthetase From Thermus Thermophilus Hb8. Structural Basis For The Catalytic Action.
J. Biol. Chem. V. 277 15890 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:8 , GLY A:10 , ASP A:12 , THR A:13 , HOH A:1457
BINDING SITE FOR RESIDUE SO4 A 510
2
AC2
SOFTWARE
SER B:8 , GLY B:10 , ASP B:12 , THR B:13 , HOH B:1194 , HOH B:1226
BINDING SITE FOR RESIDUE SO4 B 1510
3
AC3
SOFTWARE
SER C:8 , GLY C:10 , ASP C:12 , THR C:13
BINDING SITE FOR RESIDUE SO4 C 2510
4
AC4
SOFTWARE
SER D:8 , GLY D:10 , ASP D:12 , THR D:13
BINDING SITE FOR RESIDUE SO4 D 3510
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ARGININOSUCCIN_SYN_1 (A:6-14,B:6-14,C:6-14,D:6-14)
2: ARGININOSUCCIN_SYN_2 (A:114-125,B:114-125,C:114-125,D:11...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGININOSUCCIN_SYN_1
PS00564
Argininosuccinate synthase signature 1.
ASSY_THET8
6-14
4
A:6-14
B:6-14
C:6-14
D:6-14
2
ARGININOSUCCIN_SYN_2
PS00565
Argininosuccinate synthase signature 2.
ASSY_THET8
114-125
4
A:114-125
B:114-125
C:114-125
D:114-125
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1kh1a2 (A:171-395)
1b: SCOP_d1kh1b2 (B:171-395)
1c: SCOP_d1kh1c2 (C:171-395)
1d: SCOP_d1kh1d2 (D:171-395)
2a: SCOP_d1kh1a1 (A:1-165)
2b: SCOP_d1kh1b1 (B:1-165)
2c: SCOP_d1kh1c1 (C:1-165)
2d: SCOP_d1kh1d1 (D:1-165)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Argininosuccinate synthetase, C-terminal domain
(14)
Superfamily
:
Argininosuccinate synthetase, C-terminal domain
(14)
Family
:
Argininosuccinate synthetase, C-terminal domain
(12)
Protein domain
:
Argininosuccinate synthetase, C-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
1a
d1kh1a2
A:171-395
1b
d1kh1b2
B:171-395
1c
d1kh1c2
C:171-395
1d
d1kh1d2
D:171-395
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
Argininosuccinate synthetase, N-terminal domain
(12)
Thermus thermophilus [TaxId: 274]
(7)
2a
d1kh1a1
A:1-165
2b
d1kh1b1
B:1-165
2c
d1kh1c1
C:1-165
2d
d1kh1d1
D:1-165
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1kh1A01 (A:1-171)
1b: CATH_1kh1B01 (B:1-171)
1c: CATH_1kh1D01 (D:1-171)
1d: CATH_1kh1C01 (C:1-60,C:90-165)
2a: CATH_1kh1A02 (A:172-395)
2b: CATH_1kh1B02 (B:172-395)
2c: CATH_1kh1D02 (D:172-395)
2d: CATH_1kh1C02 (C:61-89,C:171-354)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
1a
1kh1A01
A:1-171
1b
1kh1B01
B:1-171
1c
1kh1D01
D:1-171
1d
1kh1C01
C:1-60,C:90-165
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Homologous Superfamily
:
Argininosuccinate synthetase, chain A, domain 2
(13)
Thermus thermophilus. Organism_taxid: 274.
(7)
2a
1kh1A02
A:172-395
2b
1kh1B02
B:172-395
2c
1kh1D02
D:172-395
2d
1kh1C02
C:61-89,C:171-354
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Arginosuc_synth_1kh1D01 (D:4-391)
1b: PFAM_Arginosuc_synth_1kh1D02 (D:4-391)
1c: PFAM_Arginosuc_synth_1kh1D03 (D:4-391)
1d: PFAM_Arginosuc_synth_1kh1D04 (D:4-391)
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Clan
:
HUP
(230)
Family
:
Arginosuc_synth
(8)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(3)
1a
Arginosuc_synth-1kh1D01
D:4-391
1b
Arginosuc_synth-1kh1D02
D:4-391
1c
Arginosuc_synth-1kh1D03
D:4-391
1d
Arginosuc_synth-1kh1D04
D:4-391
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Asym.Unit (259 KB)
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