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1KGQ
Biol. Unit 1
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Asym.Unit (51 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE IN COMPLEX WITH L-2-AMINOPIMELATE AND SUCCINAMIDE-COA
Authors
:
T. W. Beaman, K. W. Vogel, D. G. Drueckhammer, J. S. Blanchard, S. L. Rode
Date
:
28 Nov 01 (Deposition) - 03 Apr 02 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Left-Handed Parallel Beta Helix, Transferase
(Keyword Search:
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Reference
:
T. W. Beaman, K. W. Vogel, D. G. Drueckhammer, J. S. Blanchard, S. L. Roderick
Acyl Group Specificity At The Active Site Of Tetrahydridipicolinate N-Succinyltransferase.
Protein Sci. V. 11 974 2002
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: (2S)-2-AMINOHEPTANEDIOIC ACID (NPIa)
2a: SUCCINAMIDE-COA (SCOa)
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No.
Name
Count
Type
Full Name
1
NPI
3
Ligand/Ion
(2S)-2-AMINOHEPTANEDIOIC ACID
2
SCO
3
Ligand/Ion
SUCCINAMIDE-COA
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:67 , ARG A:104 , ARG A:112 , MET A:124 , ASN A:129 , MET A:139 , ASP A:141 , SER A:148 , GLY A:166 , VAL A:167 , LEU A:168 , GLU A:169 , SCO A:302 , HOH A:326
BINDING SITE FOR RESIDUE NPI A 301
2
AC2
SOFTWARE
THR A:145 , SER A:159 , GLY A:165 , GLY A:166 , PHE A:183 , GLY A:185 , ALA A:186 , ARG A:187 , GLU A:189 , VAL A:191 , GLU A:192 , SER A:203 , MET A:204 , SER A:211 , ARG A:217 , TYR A:248 , VAL A:253 , LYS A:254 , LYS A:259 , THR A:260 , LYS A:263 , NPI A:301 , HOH A:327 , HOH A:334 , HOH A:338 , HOH A:351 , HOH A:352 , HOH A:370 , HOH A:373 , HOH A:375
BINDING SITE FOR RESIDUE SCO A 302
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:134-162)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
DAPD_UNKP
134-162
3
A:134-162
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Exons
(0, 0)
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kgqa_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
(9)
Protein domain
:
Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
(6)
Mycobacterium bovis [TaxId: 1765]
(5)
1a
d1kgqa_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1kgqA01 (A:1-70)
2a: CATH_1kgqA02 (A:87-256)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1
(8)
Homologous Superfamily
:
Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1
(8)
Mycobacterium bovis. Organism_taxid: 1765.
(2)
1a
1kgqA01
A:1-70
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Mycobacterium bovis. Organism_taxid: 1765.
(2)
2a
1kgqA02
A:87-256
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Pfam Domains
(0, 0)
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Asym.Unit (51 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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