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1KGP
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (110 KB)
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(1)
Title
:
R2F FROM CORYNEBACTERIUM AMMONIAGENES IN ITS MN SUBSTITUTED FORM
Authors
:
M. Hogbom, Y. Huque, B. M. Sjoberg, P. Nordlund
Date
:
28 Nov 01 (Deposition) - 21 Dec 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Helix Bundle, Arm Exchange, Radical Protein, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Hogbom, Y. Huque, B. M. Sjoberg, P. Nordlund
Crystal Structure Of The Di-Iron/Radical Protein Of Ribonucleotide Reductase From Corynebacterium Ammoniagenes.
Biochemistry V. 41 1381 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
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No.
Name
Count
Type
Full Name
1
MN
10
Ligand/Ion
MANGANESE (II) ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:77 , GLU A:108 , HIS A:111 , PHE A:172 , GLU A:202
BINDING SITE FOR RESIDUE MN A 1001
02
AC2
SOFTWARE
GLU A:108 , GLU A:168 , GLU A:202 , HIS A:205
BINDING SITE FOR RESIDUE MN A 1002
03
AC3
SOFTWARE
ASP B:77 , GLU B:108 , HIS B:111 , PHE B:172 , GLU B:202
BINDING SITE FOR RESIDUE MN B 1003
04
AC4
SOFTWARE
GLU B:108 , GLU B:168 , GLU B:202 , HIS B:205
BINDING SITE FOR RESIDUE MN B 1004
05
AC5
SOFTWARE
ASP C:77 , GLU C:108 , HIS C:111 , GLU C:202
BINDING SITE FOR RESIDUE MN C 2001
06
AC6
SOFTWARE
GLU C:108 , GLU C:168 , GLU C:202 , HIS C:205
BINDING SITE FOR RESIDUE MN C 2002
07
AC7
SOFTWARE
ASP D:77 , GLU D:108 , HIS D:111 , PHE D:172 , GLU D:202
BINDING SITE FOR RESIDUE MN D 2003
08
AC8
SOFTWARE
GLU D:108 , GLU D:168 , GLU D:202 , HIS D:205
BINDING SITE FOR RESIDUE MN D 2004
09
AC9
SOFTWARE
HOH C:3073 , HOH C:3147 , HOH C:3174 , HOH D:2037 , HOH D:2064
BINDING SITE FOR RESIDUE MN C 3001
10
BC1
SOFTWARE
GLU C:222 , GLU C:226
BINDING SITE FOR RESIDUE MN C 3002
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1kgpa_ (A:)
1b: SCOP_d1kgpc_ (C:)
1c: SCOP_d1kgpd_ (D:)
1d: SCOP_d1kgpb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Ribonucleotide reductase R2
(45)
Corynebacterium ammoniagenes [TaxId: 1697]
(6)
1a
d1kgpa_
A:
1b
d1kgpc_
C:
1c
d1kgpd_
D:
1d
d1kgpb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1kgpA00 (A:2-297)
1b: CATH_1kgpB00 (B:2-297)
1c: CATH_1kgpC00 (C:2-297)
1d: CATH_1kgpD00 (D:2-297)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Corynebacterium ammoniagenes. Organism_taxid: 1697.
(4)
1a
1kgpA00
A:2-297
1b
1kgpB00
B:2-297
1c
1kgpC00
C:2-297
1d
1kgpD00
D:2-297
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ribonuc_red_sm_1kgpD01 (D:13-291)
1b: PFAM_Ribonuc_red_sm_1kgpD02 (D:13-291)
1c: PFAM_Ribonuc_red_sm_1kgpD03 (D:13-291)
1d: PFAM_Ribonuc_red_sm_1kgpD04 (D:13-291)
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Clan
:
Ferritin
(185)
Family
:
Ribonuc_red_sm
(41)
Corynebacterium ammoniagenes (Brevibacterium ammoniagenes)
(5)
1a
Ribonuc_red_sm-1kgpD01
D:13-291
1b
Ribonuc_red_sm-1kgpD02
D:13-291
1c
Ribonuc_red_sm-1kgpD03
D:13-291
1d
Ribonuc_red_sm-1kgpD04
D:13-291
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
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