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1KGD
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GUANYLATE KINASE-LIKE DOMAIN OF HUMAN CASK
Authors
:
Y. Li, O. Spangenberg, I. Paarmann, M. Konrad, A. Lavie
Date
:
26 Nov 01 (Deposition) - 19 Dec 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.31
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Maguk, Cask, Guanylate Kinase Like Domain, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Li, O. Spangenberg, I. Paarmann, M. Konrad, A. Lavie
Structural Basis For Nucleotide-Dependent Regulation Of Membrane-Associated Guanylate Kinase-Like Domains.
J. Biol. Chem. V. 277 4159 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
5
Ligand/Ion
FORMIC ACID
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:811 , GLY A:812
BINDING SITE FOR RESIDUE FMT A 601
2
AC2
SOFTWARE
PRO A:834 , GLN A:835 , TYR A:881 , TYR A:884
BINDING SITE FOR RESIDUE FMT A 602
3
AC3
SOFTWARE
HOH A:185 , PRO A:759 , ILE A:876
BINDING SITE FOR RESIDUE FMT A 603
4
AC4
SOFTWARE
HOH A:161 , HOH A:176 , TYR A:764 , ILE A:821 , GLN A:824 , ARG A:879
BINDING SITE FOR RESIDUE FMT A 604
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GUANYLATE_KINASE_2 (A:734-906)
2: GUANYLATE_KINASE_1 (A:769-786)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GUANYLATE_KINASE_2
PS50052
Guanylate kinase-like domain profile.
CSKP_HUMAN
739-911
1
A:734-906
2
GUANYLATE_KINASE_1
PS00856
Guanylate kinase-like signature.
CSKP_HUMAN
774-791
1
A:769-786
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.27a (A:732-741)
Exon 1.28 (A:741-768)
Exon 1.29 (A:768-835 (gaps))
Exon 1.30 (A:836-863)
Exon 1.31f (A:864-909)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26/1.27a
2: Boundary 1.27a/1.28
3: Boundary 1.28/1.29
4: Boundary 1.29/1.30
5: Boundary 1.30/1.31f
6: Boundary 1.31f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000378163
1a
ENSE00001476466
X:41782716-41782183
534
CSKP_HUMAN
1-20
20
0
-
-
1.2
ENST00000378163
2
ENSE00001761463
X:41712480-41712368
113
CSKP_HUMAN
20-58
39
0
-
-
1.3b
ENST00000378163
3b
ENSE00001640898
X:41646536-41646431
106
CSKP_HUMAN
58-93
36
0
-
-
1.4
ENST00000378163
4
ENSE00001710780
X:41604854-41604777
78
CSKP_HUMAN
93-119
27
0
-
-
1.6
ENST00000378163
6
ENSE00001755987
X:41598709-41598637
73
CSKP_HUMAN
119-143
25
0
-
-
1.7
ENST00000378163
7
ENSE00001091529
X:41530783-41530681
103
CSKP_HUMAN
144-178
35
0
-
-
1.9a
ENST00000378163
9a
ENSE00001239069
X:41524705-41524530
176
CSKP_HUMAN
178-236
59
0
-
-
1.10a
ENST00000378163
10a
ENSE00001091528
X:41519814-41519692
123
CSKP_HUMAN
237-277
41
0
-
-
1.11
ENST00000378163
11
ENSE00001091531
X:41495914-41495831
84
CSKP_HUMAN
278-305
28
0
-
-
1.13
ENST00000378163
13
ENSE00001091536
X:41485956-41485857
100
CSKP_HUMAN
306-339
34
0
-
-
1.14
ENST00000378163
14
ENSE00001765981
X:41481887-41481870
18
CSKP_HUMAN
339-345
7
0
-
-
1.15
ENST00000378163
15
ENSE00001091537
X:41469278-41469157
122
CSKP_HUMAN
345-385
41
0
-
-
1.16b
ENST00000378163
16b
ENSE00001035465
X:41448845-41448768
78
CSKP_HUMAN
386-411
26
0
-
-
1.17
ENST00000378163
17
ENSE00001035476
X:41446240-41446160
81
CSKP_HUMAN
412-438
27
0
-
-
1.18a
ENST00000378163
18a
ENSE00001035482
X:41437781-41437593
189
CSKP_HUMAN
439-501
63
0
-
-
1.19
ENST00000378163
19
ENSE00000978460
X:41428999-41428921
79
CSKP_HUMAN
502-528
27
0
-
-
1.20a
ENST00000378163
20a
ENSE00000978461
X:41420897-41420812
86
CSKP_HUMAN
528-556
29
0
-
-
1.21a
ENST00000378163
21a
ENSE00000978462
X:41419100-41419032
69
CSKP_HUMAN
557-579
23
0
-
-
1.22
ENST00000378163
22
ENSE00000978463
X:41416353-41416285
69
CSKP_HUMAN
580-602
23
0
-
-
1.23
ENST00000378163
23
ENSE00000978464
X:41414888-41414853
36
CSKP_HUMAN
603-614
12
0
-
-
1.24
ENST00000378163
24
ENSE00000978465
X:41413168-41412972
197
CSKP_HUMAN
615-680
66
0
-
-
1.26
ENST00000378163
26
ENSE00000978466
X:41402059-41401944
116
CSKP_HUMAN
680-719
40
0
-
-
1.27a
ENST00000378163
27a
ENSE00001238919
X:41394226-41394146
81
CSKP_HUMAN
719-746
28
1
A:732-741
10
1.28
ENST00000378163
28
ENSE00000978468
X:41394039-41393959
81
CSKP_HUMAN
746-773
28
1
A:741-768
28
1.29
ENST00000378163
29
ENSE00000978469
X:41390462-41390260
203
CSKP_HUMAN
773-840
68
1
A:768-835 (gaps)
68
1.30
ENST00000378163
30
ENSE00000978470
X:41383287-41383204
84
CSKP_HUMAN
841-868
28
1
A:836-863
28
1.31f
ENST00000378163
31f
ENSE00001476465
X:41379849-41378518
1332
CSKP_HUMAN
869-926
58
1
A:864-909
46
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kgda_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Guanylate kinase-like domain of Cask
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1kgda_
A:
[
close SCOP info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1kgdA02 (A:764-826)
2a: CATH_1kgdA01 (A:732-763,A:827-909)
View:
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Guanylate Kinase phosphate binding domain
(22)
Homologous Superfamily
:
Guanylate Kinase phosphate binding domain
(22)
Human (Homo sapiens)
(1)
1a
1kgdA02
A:764-826
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
2a
1kgdA01
A:732-763,A:827-909
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Guanylate_kin_1kgdA01 (A:734-904)
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Clans
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)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Guanylate_kin
(23)
Homo sapiens (Human)
(4)
1a
Guanylate_kin-1kgdA01
A:734-904
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