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1KG7
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E161A MUTANT OF E.COLI MUTY (CORE FRAGMENT)
Authors
:
R. Gilboa, A. Kilshtein, D. O. Zharkov, J. H. Kycia, S. E. Gerchman, A. P. G. Shoham
Date
:
26 Nov 01 (Deposition) - 26 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dna Repair, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Gilboa, A. Kilshtein, D. O. Zharkov, J. H. Kycia, S. E. Gerchman, A. P. Grollman, G. Shoham
Analysis Of The E. Coli Muty Dna Glycosylase Structure And Function By Site-Directed Mutagenesis
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: IRON/SULFUR CLUSTER (SF4a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:44 , VAL A:45 , HOH A:558 , HOH A:598
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
PRO A:69 , LEU A:70 , HOH A:544 , HOH A:545 , HOH A:711 , HOH A:756
BINDING SITE FOR RESIDUE SO4 A 302
3
AC3
SOFTWARE
CYS A:192 , CYS A:199 , CYS A:202 , GLN A:205 , CYS A:208
BINDING SITE FOR RESIDUE SF4 A 300
4
AC4
SOFTWARE
GLN A:42 , THR A:43 , ARG A:58 , ASP A:64 , GLY A:79 , LEU A:80 , HOH A:686
BINDING SITE FOR RESIDUE GOL A 310
5
AC5
SOFTWARE
PHE A:108 , ARG A:119 , TRP A:165 , ASN A:213 , HOH A:508 , HOH A:606 , HOH A:637
BINDING SITE FOR RESIDUE GOL A 311
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ENDONUCLEASE_III_2 (A:102-131)
2: ENDONUCLEASE_III_1 (A:192-208)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENDONUCLEASE_III_2
PS01155
Endonuclease III family signature.
MUTY_ECOLI
102-131
1
A:102-131
2
ENDONUCLEASE_III_1
PS00764
Endonuclease III iron-sulfur binding region signature.
MUTY_ECOLI
192-208
1
A:192-208
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kg7a_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA-glycosylase
(77)
Superfamily
:
DNA-glycosylase
(77)
Family
:
Mismatch glycosylase
(22)
Protein domain
:
Catalytic domain of MutY
(17)
Escherichia coli [TaxId: 562]
(13)
1a
d1kg7a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1kg7A01 (A:1-20,A:133-224)
2a: CATH_1kg7A02 (A:21-132)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Endonuclease Iii, domain 2
(65)
Homologous Superfamily
:
Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)
(65)
Escherichia coli. Organism_taxid: 562.
(10)
1a
1kg7A01
A:1-20,A:133-224
Topology
:
Endonuclease III; domain 1
(74)
Homologous Superfamily
:
Hypothetical protein; domain 2
(73)
Escherichia coli. Organism_taxid: 562.
(11)
2a
1kg7A02
A:21-132
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (48 KB)
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