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1KFI
Asym. Unit
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Asym.Unit (192 KB)
Biol.Unit 1 (188 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXOCYTOSIS-SENSITIVE PHOSPHOPROTEIN, PP63/PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM PARAMECIUM
Authors
:
S. Mueller, K. Diederichs, J. Breed, R. Kissmehl, K. Hauser, H. Plattner, W. Welte
Date
:
21 Nov 01 (Deposition) - 16 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Parafusin, Phosphoprotein Pp63, Exocytosis, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Muller, K. Diederichs, J. Breed, R. Kissmehl, K. Hauser, H. Plattner, W. Welte
Crystal Structure Analysis Of The Exocytosis-Sensitive Phosphoprotein, Pp63/Parafusin (Phosphoglucomutase), From Paramecium Reveals Significant Conformational Variability.
J. Mol. Biol. V. 315 141 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
2
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:308 , ASP A:310 , ASP A:312 , SO4 A:601
BINDING SITE FOR RESIDUE ZN A 700
2
AC2
SOFTWARE
SER A:126 , HIS A:127 , ASP A:308 , ASP A:310 , ASP A:312 , ARG A:313 , LYS A:405 , ZN A:700
BINDING SITE FOR RESIDUE SO4 A 601
3
AC3
SOFTWARE
THR A:23 , ARG A:515 , SER A:517 , GLY A:518 , THR A:519 , ARG A:527
BINDING SITE FOR RESIDUE SO4 A 603
4
AC4
SOFTWARE
ASP B:308 , ASP B:310 , ASP B:312 , SO4 B:602
BINDING SITE FOR RESIDUE ZN B 700
5
AC5
SOFTWARE
SER B:126 , HIS B:127 , ASP B:308 , ASP B:312 , ARG B:313 , TRP B:375 , ZN B:700
BINDING SITE FOR RESIDUE SO4 B 602
6
AC6
SOFTWARE
ARG B:515 , SER B:517 , GLY B:518 , THR B:519 , ARG B:527
BINDING SITE FOR RESIDUE SO4 B 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PGM_PMM (A:120-129,B:120-129)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PGM_PMM
PS00710
Phosphoglucomutase and phosphomannomutase phosphoserine signature.
PGM1_PARTE
120-129
2
A:120-129
B:120-129
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1kfia4 (A:444-572)
1b: SCOP_d1kfib4 (B:444-572)
2a: SCOP_d1kfia1 (A:3-205)
2b: SCOP_d1kfia2 (A:206-323)
2c: SCOP_d1kfia3 (A:324-443)
2d: SCOP_d1kfib1 (B:3-205)
2e: SCOP_d1kfib2 (B:206-323)
2f: SCOP_d1kfib3 (B:324-443)
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(
)
(
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Phosphoglucomutase, C-terminal domain
(24)
Family
:
Phosphoglucomutase, C-terminal domain
(21)
Protein domain
:
Exocytosis-sensitive phosphoprotein, pp63/parafusin
(2)
Ciliate (Paramecium tetraurelia) [TaxId: 5888]
(2)
1a
d1kfia4
A:444-572
1b
d1kfib4
B:444-572
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglucomutase, first 3 domains
(23)
Superfamily
:
Phosphoglucomutase, first 3 domains
(23)
Family
:
Phosphoglucomutase, first 3 domains
(20)
Protein domain
:
Exocytosis-sensitive phosphoprotein, pp63/parafusin
(2)
Ciliate (Paramecium tetraurelia) [TaxId: 5888]
(2)
2a
d1kfia1
A:3-205
2b
d1kfia2
A:206-323
2c
d1kfia3
A:324-443
2d
d1kfib1
B:3-205
2e
d1kfib2
B:206-323
2f
d1kfib3
B:324-443
[
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]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1kfiA04 (A:448-572)
1b: CATH_1kfiB04 (B:448-572)
2a: CATH_1kfiA03 (A:322-447)
2b: CATH_1kfiB03 (B:322-447)
2c: CATH_1kfiA01 (A:3-212)
2d: CATH_1kfiB01 (B:3-212)
2e: CATH_1kfiA02 (A:213-321)
2f: CATH_1kfiB02 (B:213-321)
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)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
Major birch pollen allergen Bet v 1
(22)
Paramecium tetraurelia. Organism_taxid: 5888.
(2)
1a
1kfiA04
A:448-572
1b
1kfiB04
B:448-572
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3
(24)
Homologous Superfamily
:
Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3
(24)
Paramecium tetraurelia. Organism_taxid: 5888.
(2)
2a
1kfiA03
A:322-447
2b
1kfiB03
B:322-447
2c
1kfiA01
A:3-212
2d
1kfiB01
B:3-212
2e
1kfiA02
A:213-321
2f
1kfiB02
B:213-321
[
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_PGM_PMM_III_1kfiB01 (B:325-442)
1b: PFAM_PGM_PMM_III_1kfiB02 (B:325-442)
2a: PFAM_PGM_PMM_II_1kfiB03 (B:207-320)
2b: PFAM_PGM_PMM_II_1kfiB04 (B:207-320)
3a: PFAM_PGM_PMM_IV_1kfiB05 (B:455-551)
3b: PFAM_PGM_PMM_IV_1kfiB06 (B:455-551)
4a: PFAM_PGM_PMM_I_1kfiB07 (B:18-168)
4b: PFAM_PGM_PMM_I_1kfiB08 (B:18-168)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PGM_PMM_III]
(17)
Family
:
PGM_PMM_III
(17)
Paramecium tetraurelia
(2)
1a
PGM_PMM_III-1kfiB01
B:325-442
1b
PGM_PMM_III-1kfiB02
B:325-442
Clan
:
no clan defined [family: PGM_PMM_II]
(17)
Family
:
PGM_PMM_II
(17)
Paramecium tetraurelia
(2)
2a
PGM_PMM_II-1kfiB03
B:207-320
2b
PGM_PMM_II-1kfiB04
B:207-320
Clan
:
no clan defined [family: PGM_PMM_IV]
(18)
Family
:
PGM_PMM_IV
(18)
Paramecium tetraurelia
(2)
3a
PGM_PMM_IV-1kfiB05
B:455-551
3b
PGM_PMM_IV-1kfiB06
B:455-551
Clan
:
no clan defined [family: PGM_PMM_I]
(17)
Family
:
PGM_PMM_I
(17)
Paramecium tetraurelia
(2)
4a
PGM_PMM_I-1kfiB07
B:18-168
4b
PGM_PMM_I-1kfiB08
B:18-168
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