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1KEX
Asym. Unit
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Asym.Unit (33 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE B1 DOMAIN OF HUMAN NEUROPILIN-1
Authors
:
C. C. Lee, A. Kreusch, D. Mcmullan, K. Ng, G. Spraggon
Date
:
18 Nov 01 (Deposition) - 28 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Barrel, Jelly-Roll, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Lee, A. Kreusch, D. Mcmullan, K. Ng, G. Spraggon
Crystal Structure Of The Human Neuropilin-1 B1 Domain
Structure V. 11 99 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 (A:3-152|-)
2: FA58C_1 (A:42-71|-)
3: FA58C_2 (A:136-152|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
NRP1_HUMAN
275-424
431-583
1
A:3-152
-
2
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
NRP1_HUMAN
314-343
470-502
1
A:42-71
-
3
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
NRP1_HUMAN
408-424
566-583
1
A:136-152
-
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.7 (A:1-55)
Exon 1.9 (A:56-107)
Exon 1.10 (A:108-155)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000374867
2a
ENSE00002163568
chr10:
33623833-33623238
596
NRP1_HUMAN
1-25
25
0
-
-
1.3
ENST00000374867
3
ENSE00001716361
chr10:
33619810-33619636
175
NRP1_HUMAN
25-83
59
0
-
-
1.4
ENST00000374867
4
ENSE00001682768
chr10:
33559784-33559603
182
NRP1_HUMAN
83-144
62
0
-
-
1.5a
ENST00000374867
5a
ENSE00001639362
chr10:
33552801-33552574
228
NRP1_HUMAN
144-220
77
0
-
-
1.6
ENST00000374867
6
ENSE00001792511
chr10:
33545399-33545244
156
NRP1_HUMAN
220-272
53
0
-
-
1.7
ENST00000374867
7
ENSE00001792470
chr10:
33543122-33542956
167
NRP1_HUMAN
272-327
56
1
A:1-55
55
1.9
ENST00000374867
9
ENSE00001681421
chr10:
33515217-33515062
156
NRP1_HUMAN
328-379
52
1
A:56-107
52
1.10
ENST00000374867
10
ENSE00001787691
chr10:
33510791-33510647
145
NRP1_HUMAN
380-428
49
1
A:108-155
48
1.11a
ENST00000374867
11a
ENSE00001704766
chr10:
33502645-33502314
332
NRP1_HUMAN
428-538
111
0
-
-
1.12a
ENST00000374867
12a
ENSE00001740916
chr10:
33496644-33496500
145
NRP1_HUMAN
539-587
49
0
-
-
1.14b
ENST00000374867
14b
ENSE00001661322
chr10:
33491923-33491819
105
NRP1_HUMAN
587-622
36
0
-
-
1.15a
ENST00000374867
15a
ENSE00002161399
chr10:
33486637-33486578
60
NRP1_HUMAN
622-642
21
0
-
-
1.18
ENST00000374867
18
ENSE00001689493
chr10:
33481346-33481209
138
NRP1_HUMAN
642-688
47
0
-
-
1.19
ENST00000374867
19
ENSE00001674853
chr10:
33475416-33475145
272
NRP1_HUMAN
688-778
91
0
-
-
1.20a
ENST00000374867
20a
ENSE00001756610
chr10:
33474652-33474556
97
NRP1_HUMAN
779-811
33
0
-
-
1.21
ENST00000374867
21
ENSE00001640966
chr10:
33471676-33471626
51
NRP1_HUMAN
811-828
18
0
-
-
1.22c
ENST00000374867
22c
ENSE00001636238
chr10:
33469293-33466422
2872
NRP1_HUMAN
828-923
96
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kexa_ (A:)
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Protein Domains
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)
(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
B1 domain of neuropilin-1
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1kexa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1kexA00 (A:1-155)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
1kexA00
A:1-155
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_F5_F8_type_C_1kexA01 (A:18-149)
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Clan
:
GBD
(153)
Family
:
F5_F8_type_C
(45)
Homo sapiens (Human)
(10)
1a
F5_F8_type_C-1kexA01
A:18-149
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Asymmetric Unit 1
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Asym.Unit (33 KB)
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