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1KEO
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
TWISTS AND TURNS OF THE CD-MPR: LIGAND-BOUND VERSUS LIGAND-FREE RECEPTOR
Authors
:
L. J. Olson, J. Zhang, N. M. Dahms, J. J. Kim
Date
:
16 Nov 01 (Deposition) - 23 Jan 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
P Lectin, Receptor, Mannose 6-Phosphate, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Olson, J. Zhang, N. M. Dahms, J. J. Kim
Twists And Turns Of The Cation-Dependent Mannose 6-Phosphat Receptor. Ligand-Bound Versus Ligand-Free Receptor
J. Biol. Chem. V. 277 10156 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:79 , ASN A:81 , GLU A:82
BINDING SITE FOR RESIDUE NAG A 201
2
AC2
SOFTWARE
ASN B:81 , GLU B:82
BINDING SITE FOR RESIDUE NAG B 201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 8)
Info
All Exons
Exon 1.2 (A:3-33 | B:3-33)
Exon 1.3 (A:33-89 | B:33-89)
Exon 1.4 (A:89-125 | B:89-125)
Exon 1.5 (A:126-154 | B:126-154)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000024233
1
ENSBTAE00000295015
chr5:
108383511-108383668
158
MPRD_BOVIN
1-1
1
0
-
-
1.2
ENSBTAT00000024233
2
ENSBTAE00000197230
chr5:
108390145-108390324
180
MPRD_BOVIN
1-61
61
2
A:3-33
B:3-33
31
31
1.3
ENSBTAT00000024233
3
ENSBTAE00000197232
chr5:
108391558-108391724
167
MPRD_BOVIN
61-117
57
2
A:33-89
B:33-89
57
57
1.4
ENSBTAT00000024233
4
ENSBTAE00000295014
chr5:
108392731-108392840
110
MPRD_BOVIN
117-153
37
2
A:89-125
B:89-125
37
37
1.5
ENSBTAT00000024233
5
ENSBTAE00000197235
chr5:
108393267-108393397
131
MPRD_BOVIN
154-197
44
2
A:126-154
B:126-154
29
29
1.6
ENSBTAT00000024233
6
ENSBTAE00000197236
chr5:
108393940-108394066
127
MPRD_BOVIN
197-239
43
0
-
-
1.7
ENSBTAT00000024233
7
ENSBTAE00000197238
chr5:
108394495-108396042
1548
MPRD_BOVIN
240-279
40
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1keoa_ (A:)
1b: SCOP_d1keob_ (B:)
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Protein Domains
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(
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(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Mannose 6-phosphate receptor domain
(26)
Superfamily
:
Mannose 6-phosphate receptor domain
(26)
Family
:
Mannose 6-phosphate receptor domain
(26)
Protein domain
:
Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain
(11)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d1keoa_
A:
1b
d1keob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1keoA00 (A:3-154)
1b: CATH_1keoB00 (B:3-154)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Homologous Superfamily
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Cattle (Bos taurus)
(11)
1a
1keoA00
A:3-154
1b
1keoB00
B:3-154
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Man_6_P_recep_1keoB01 (B:3-154)
1b: PFAM_Man_6_P_recep_1keoB02 (B:3-154)
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Clan
:
M6PR
(17)
Family
:
Man-6-P_recep
(9)
Bos taurus (Bovine)
(9)
1a
Man-6-P_recep-1keoB01
B:3-154
1b
Man-6-P_recep-1keoB02
B:3-154
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Asymmetric Unit 1
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Asym.Unit (57 KB)
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