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1KEN
Asym. Unit
Info
Asym.Unit (353 KB)
Biol.Unit 1 (345 KB)
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(1)
Title
:
INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH AN ANTIBODY THAT PREVENTS THE HEMAGGLUTININ LOW PH FUSOGENIC TRANSITION
Authors
:
C. Barbey-Martin, B. Gigant, T. Bizebard, L. J. Calder, S. A. Wharto, J. M. Knossow
Date
:
16 Nov 01 (Deposition) - 24 Apr 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F,H,L,T,U
Biol. Unit 1: A,B,C,D,E,F,H,L,T,U (1x)
Keywords
:
Hemagglutinin, Envelope Protein, Glycoprotein, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Barbey-Martin, B. Gigant, T. Bizebard, L. J. Calder, S. A. Wharton, J. J. Skehel, M. Knossow
An Antibody That Prevents The Hemagglutinin Low Ph Fusogeni Transition
Virology V. 294 70 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:165 , THR A:167 , NAG A:451 , SER E:219 , TRP E:222
BINDING SITE FOR RESIDUE NAG A 450
2
AC2
SOFTWARE
NAG A:450 , MAN A:452 , PRO E:221 , TRP E:222
BINDING SITE FOR RESIDUE NAG A 451
3
AC3
SOFTWARE
NAG A:451
BINDING SITE FOR RESIDUE MAN A 452
4
AC4
SOFTWARE
SER A:219 , TRP A:222 , ASN C:165 , THR C:167 , NAG C:451 , TYR H:27 , SER H:31 , GLY H:32 , TYR H:100
BINDING SITE FOR RESIDUE NAG C 450
5
AC5
SOFTWARE
TRP A:222 , NAG C:450 , MAN C:452 , TYR H:34 , TYR H:54
BINDING SITE FOR RESIDUE NAG C 451
6
AC6
SOFTWARE
NAG C:451
BINDING SITE FOR RESIDUE MAN C 452
7
AC7
SOFTWARE
SER C:219 , TRP C:222 , ASN E:165 , THR E:167 , NAG E:451 , TYR T:27 , SER T:31 , GLY T:32 , TYR T:100
BINDING SITE FOR RESIDUE NAG E 450
8
AC8
SOFTWARE
TRP C:222 , NAG E:450 , MAN E:452 , TYR T:34 , TYR T:54
BINDING SITE FOR RESIDUE NAG E 451
9
AC9
SOFTWARE
NAG E:451 , GLU L:155 , ARG L:156
BINDING SITE FOR RESIDUE MAN E 452
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:193-199,U:193-199)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
L:193-199
U:193-199
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 14)
Info
All SCOP Domains
1a: SCOP_d1kenh2 (H:121-221)
1b: SCOP_d1kent2 (T:121-219)
2a: SCOP_d1kenl2 (L:109-213)
2b: SCOP_d1kenu2 (U:109-213)
3a: SCOP_d1kenh1 (H:1-120)
3b: SCOP_d1kent1 (T:1-120)
4a: SCOP_d1kenl1 (L:1-108)
4b: SCOP_d1kenu1 (U:1-108)
5a: SCOP_d1kena_ (A:)
5b: SCOP_d1kenc_ (C:)
5c: SCOP_d1kene_ (E:)
6a: SCOP_d1kenb_ (B:)
6b: SCOP_d1kend_ (D:)
6c: SCOP_d1kenf_ (F:)
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Classes
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Folds
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Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1kenh2
H:121-221
1b
d1kent2
T:121-219
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1kenl2
L:109-213
2b
d1kenu2
U:109-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
(38)
3a
d1kenh1
H:1-120
3b
d1kent1
T:1-120
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(13)
4a
d1kenl1
L:1-108
4b
d1kenu1
U:1-108
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
5a
d1kena_
A:
5b
d1kenc_
C:
5c
d1kene_
E:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
6a
d1kenb_
B:
6b
d1kend_
D:
6c
d1kenf_
F:
[
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CATH Domains
(3, 14)
Info
all CATH domains
1a: CATH_1kenA01 (A:57-272)
1b: CATH_1kenC01 (C:57-272)
1c: CATH_1kenE01 (E:57-272)
2a: CATH_1kenB00 (B:1-175)
2b: CATH_1kenD00 (D:1-175)
2c: CATH_1kenF00 (F:1-175)
3a: CATH_1kenL02 (L:110-212)
3b: CATH_1kenU02 (U:110-212)
3c: CATH_1kenL01 (L:1-109)
3d: CATH_1kenU01 (U:1-109)
3e: CATH_1kenH02 (H:121-219)
3f: CATH_1kenT02 (T:121-219)
3g: CATH_1kenH01 (H:1-120)
3h: CATH_1kenT01 (T:1-120)
View:
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)
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31.Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31. Mus musculus. House mouse. Organism_taxid: 10090.
(1)
1a
1kenA01
A:57-272
1b
1kenC01
C:57-272
1c
1kenE01
E:57-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31.Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31. Mus musculus. House mouse. Organism_taxid: 10090.
(1)
2a
1kenB00
B:1-175
2b
1kenD00
D:1-175
2c
1kenF00
F:1-175
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31.Influenza a virus (a/x-31(h3n2)). Organism_taxid: 132504. Strain: x31. Mus musculus. House mouse. Organism_taxid: 10090.
(1)
3a
1kenL02
L:110-212
3b
1kenU02
U:110-212
3c
1kenL01
L:1-109
3d
1kenU01
U:1-109
3e
1kenH02
H:121-219
3f
1kenT02
T:121-219
3g
1kenH01
H:1-120
3h
1kenT01
T:1-120
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_C1_set_1kenU01 (U:120-207)
1b: PFAM_C1_set_1kenU02 (U:120-207)
2a: PFAM_Hemagglutinin_1kenF01 (F:1-175)
2b: PFAM_Hemagglutinin_1kenF02 (F:1-175)
2c: PFAM_Hemagglutinin_1kenF03 (F:1-175)
2d: PFAM_Hemagglutinin_1kenF04 (F:1-175)
2e: PFAM_Hemagglutinin_1kenF05 (F:1-175)
2f: PFAM_Hemagglutinin_1kenF06 (F:1-175)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1kenU01
U:120-207
1b
C1-set-1kenU02
U:120-207
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/X-31 H3N2)
(1)
2a
Hemagglutinin-1kenF01
F:1-175
2b
Hemagglutinin-1kenF02
F:1-175
2c
Hemagglutinin-1kenF03
F:1-175
2d
Hemagglutinin-1kenF04
F:1-175
2e
Hemagglutinin-1kenF05
F:1-175
2f
Hemagglutinin-1kenF06
F:1-175
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Asymmetric Unit 1
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Asym.Unit (353 KB)
Header - Asym.Unit
Biol.Unit 1 (345 KB)
Header - Biol.Unit 1
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