PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1KEE
Biol. Unit 5
Info
Asym.Unit (1004 KB)
Biol.Unit 1 (986 KB)
Biol.Unit 2 (255 KB)
Biol.Unit 3 (264 KB)
Biol.Unit 4 (262 KB)
Biol.Unit 5 (262 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
INACTIVATION OF THE AMIDOTRANSFERASE ACTIVITY OF CARBAMOYL PHOSPHATE SYNTHETASE BY THE ANTIBIOTIC ACIVICIN
Authors
:
B. W. Miles, J. B. Thoden, H. M. Holden, F. M. Raushel
Date
:
15 Nov 01 (Deposition) - 21 Dec 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: G,H (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Atp Grasp, Channeling, Antibiotic, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Miles, J. B. Thoden, H. M. Holden, F. M. Raushel
Inactivation Of The Amidotransferase Activity Of Carbamoyl Phosphate Synthetase By The Antibiotic Acivicin.
J. Biol. Chem. V. 277 4368 2002
[
close entry info
]
Hetero Components
(5, 6)
Info
All Hetero Components
1a: S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZ... (143a)
1b: S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZ... (143b)
1c: S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZ... (143c)
1d: S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZ... (143d)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
2f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
2g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
2h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
3j: CHLORIDE ION (CLj)
3k: CHLORIDE ION (CLk)
3l: CHLORIDE ION (CLl)
3m: CHLORIDE ION (CLm)
3n: CHLORIDE ION (CLn)
3o: CHLORIDE ION (CLo)
3p: CHLORIDE ION (CLp)
3q: CHLORIDE ION (CLq)
3r: CHLORIDE ION (CLr)
3s: CHLORIDE ION (CLs)
3t: CHLORIDE ION (CLt)
3u: CHLORIDE ION (CLu)
3v: CHLORIDE ION (CLv)
4a: POTASSIUM ION (Ka)
4aa: POTASSIUM ION (Kaa)
4ab: POTASSIUM ION (Kab)
4ac: POTASSIUM ION (Kac)
4ad: POTASSIUM ION (Kad)
4ae: POTASSIUM ION (Kae)
4af: POTASSIUM ION (Kaf)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
4q: POTASSIUM ION (Kq)
4r: POTASSIUM ION (Kr)
4s: POTASSIUM ION (Ks)
4t: POTASSIUM ION (Kt)
4u: POTASSIUM ION (Ku)
4v: POTASSIUM ION (Kv)
4w: POTASSIUM ION (Kw)
4x: POTASSIUM ION (Kx)
4y: POTASSIUM ION (Ky)
4z: POTASSIUM ION (Kz)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
5e: MANGANESE (II) ION (MNe)
5f: MANGANESE (II) ION (MNf)
5g: MANGANESE (II) ION (MNg)
5h: MANGANESE (II) ION (MNh)
5i: MANGANESE (II) ION (MNi)
5j: MANGANESE (II) ION (MNj)
5k: MANGANESE (II) ION (MNk)
5l: MANGANESE (II) ION (MNl)
6a: TETRAETHYLAMMONIUM ION (NETa)
6b: TETRAETHYLAMMONIUM ION (NETb)
6c: TETRAETHYLAMMONIUM ION (NETc)
6d: TETRAETHYLAMMONIUM ION (NETd)
7a: L-ORNITHINE (ORNa)
7b: L-ORNITHINE (ORNb)
7c: L-ORNITHINE (ORNc)
7d: L-ORNITHINE (ORNd)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
8d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
143
1
Mod. Amino Acid
S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZOL-3-YL-CYSTEINE
2
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
K
-1
Ligand/Ion
POTASSIUM ION
5
MN
-1
Ligand/Ion
MANGANESE (II) ION
6
NET
1
Ligand/Ion
TETRAETHYLAMMONIUM ION
7
ORN
1
Ligand/Ion
L-ORNITHINE
8
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: BC8 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: HC4 (SOFTWARE)
19: IC2 (SOFTWARE)
20: IC3 (SOFTWARE)
21: IC4 (SOFTWARE)
22: IC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
GLU C:299 , ASN C:301 , ADP C:2023 , PO4 C:2028 , HOH C:5151
BINDING SITE FOR RESIDUE MN C 2024
02
BC9
SOFTWARE
GLN C:285 , GLU C:299 , ADP C:2023 , PO4 C:2028 , HOH C:5205
BINDING SITE FOR RESIDUE MN C 2025
03
CC1
SOFTWARE
GLU C:215 , ASN C:236 , ASP C:238 , ALA C:239 , ILE C:242 , SER C:247
BINDING SITE FOR RESIDUE K C 5026
04
CC2
SOFTWARE
ALA C:126 , GLU C:127 , GLU C:299 , MET C:300 , ASN C:301 , HOH C:5150 , HOH C:5618
BINDING SITE FOR RESIDUE K C 5027
05
CC3
SOFTWARE
GLN C:829 , GLU C:841 , ADP C:2029 , HOH C:5518 , HOH C:5519
BINDING SITE FOR RESIDUE MN C 2030
06
CC4
SOFTWARE
GLU C:841 , ASN C:843 , ADP C:2029
BINDING SITE FOR RESIDUE K C 5031
07
CC5
SOFTWARE
GLU C:761 , HIS C:781 , GLU C:783 , GLN C:784 , VAL C:787 , SER C:792
BINDING SITE FOR RESIDUE K C 5032
08
CC6
SOFTWARE
THR C:143 , ALA C:144 , HOH C:5156
BINDING SITE FOR RESIDUE K C 5035
09
CC7
SOFTWARE
GLY C:382 , GLU C:383 , ASN C:570 , ASN C:602 , GLU C:604
BINDING SITE FOR RESIDUE K C 5036
10
CC8
SOFTWARE
ASP C:84 , GLY C:112 , THR C:114 , HOH C:5047
BINDING SITE FOR RESIDUE K C 5037
11
CC9
SOFTWARE
HOH C:5439 , HIS D:16 , ASP D:112
BINDING SITE FOR RESIDUE K D 5038
12
DC1
SOFTWARE
THR C:173 , MET C:174
BINDING SITE FOR RESIDUE CL C 5039
13
DC2
SOFTWARE
ASN C:289 , ASN C:292 , ARG C:294
BINDING SITE FOR RESIDUE CL C 5040
14
DC3
SOFTWARE
ALA C:370 , ASN C:371 , PHE C:900 , PRO C:901 , GLY C:902
BINDING SITE FOR RESIDUE CL C 5041
15
DC4
SOFTWARE
LYS C:475 , ASN C:485
BINDING SITE FOR RESIDUE CL C 5042
16
DC5
SOFTWARE
GLU C:549 , HOH C:5439 , ASP D:114 , HOH D:1763
BINDING SITE FOR RESIDUE CL D 5043
17
DC6
SOFTWARE
PHE C:578 , ARG C:845 , ALA C:847 , ARG C:848
BINDING SITE FOR RESIDUE CL C 5044
18
HC4
SOFTWARE
MET C:174 , GLY C:175 , HIS C:243 , GLN C:285 , GLU C:299 , ASN C:301 , ARG C:303 , ARG C:306 , ADP C:2023 , MN C:2024 , MN C:2025 , HOH C:5259 , HOH C:5592
BINDING SITE FOR RESIDUE PO4 C 2028
19
IC2
SOFTWARE
ARG C:129 , ILE C:167 , ARG C:169 , THR C:173 , MET C:174 , GLY C:175 , GLY C:176 , GLU C:208 , LEU C:210 , ILE C:211 , GLU C:215 , MET C:240 , GLY C:241 , ILE C:242 , HIS C:243 , THR C:244 , GLN C:285 , ILE C:298 , GLU C:299 , THR C:376 , MN C:2024 , MN C:2025 , PO4 C:2028 , HOH C:5151 , HOH C:5190 , HOH C:5205 , HOH C:5610
BINDING SITE FOR RESIDUE ADP C 2023
20
IC3
SOFTWARE
PRO C:690 , ARG C:715 , MET C:725 , HIS C:754 , PHE C:755 , LEU C:756 , GLU C:761 , ALA C:785 , GLY C:786 , VAL C:787 , HIS C:788 , SER C:789 , GLN C:829 , GLU C:841 , MN C:2030 , K C:5031 , HOH C:5459 , HOH C:5487 , HOH C:5518 , HOH C:5519 , HOH C:5522 , HOH C:5801
BINDING SITE FOR RESIDUE ADP C 2029
21
IC4
SOFTWARE
GLU C:783 , ASP C:791 , ALA C:793 , GLU C:892 , LEU C:907 , TYR C:1040 , ASP C:1041 , THR C:1042 , HOH C:5499 , HOH C:5543
BINDING SITE FOR RESIDUE ORN C 5033
22
IC5
SOFTWARE
GLN C:22 , THR C:94 , ASN C:97 , ASN C:936 , HOH C:5069
BINDING SITE FOR RESIDUE NET C 5034
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CPSASE_1 (C:164-178,C:710-724)
2: CPSASE_2 (C:297-304,C:839-846)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
CARB_ECOLI
164-178
710-724
2
-
C:164-178
-
-
-
C:710-724
-
-
2
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
CARB_ECOLI
297-304
839-846
2
-
C:297-304
-
-
-
C:839-846
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(6, 32)
Info
All SCOP Domains
1a: SCOP_d1keea1 (A:403-555)
1b: SCOP_d1keec1 (C:403-555)
1c: SCOP_d1keee1 (E:403-555)
1d: SCOP_d1keeg1 (G:403-555)
2a: SCOP_d1keea5 (A:128-402)
2b: SCOP_d1keea6 (A:677-935)
2c: SCOP_d1keec5 (C:128-402)
2d: SCOP_d1keec6 (C:677-935)
2e: SCOP_d1keee5 (E:128-402)
2f: SCOP_d1keee6 (E:677-935)
2g: SCOP_d1keeg5 (G:128-402)
2h: SCOP_d1keeg6 (G:677-935)
3a: SCOP_d1keeb2 (B:153-380)
3b: SCOP_d1keed2 (D:153-380)
3c: SCOP_d1keef2 (F:153-380)
3d: SCOP_d1keeh2 (H:153-380)
4a: SCOP_d1keea2 (A:936-1073)
4b: SCOP_d1keec2 (C:936-1073)
4c: SCOP_d1keee2 (E:936-1073)
4d: SCOP_d1keeg2 (G:936-1073)
5a: SCOP_d1keea3 (A:1-127)
5b: SCOP_d1keea4 (A:556-676)
5c: SCOP_d1keec3 (C:1-127)
5d: SCOP_d1keec4 (C:556-676)
5e: SCOP_d1keee3 (E:1-127)
5f: SCOP_d1keee4 (E:556-676)
5g: SCOP_d1keeg3 (G:1-127)
5h: SCOP_d1keeg4 (G:556-676)
6a: SCOP_d1keeb1 (B:2-152)
6b: SCOP_d1keed1 (D:2-152)
6c: SCOP_d1keef1 (F:2-152)
6d: SCOP_d1keeh1 (H:2-152)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Superfamily
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Family
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Escherichia coli [TaxId: 562]
(10)
1a
d1keea1
A:403-555
1b
d1keec1
C:403-555
1c
d1keee1
E:403-555
1d
d1keeg1
G:403-555
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
(10)
Escherichia coli [TaxId: 562]
(10)
2a
d1keea5
A:128-402
2b
d1keea6
A:677-935
2c
d1keec5
C:128-402
2d
d1keec6
C:677-935
2e
d1keee5
E:128-402
2f
d1keee6
E:677-935
2g
d1keeg5
G:128-402
2h
d1keeg6
G:677-935
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
3a
d1keeb2
B:153-380
3b
d1keed2
D:153-380
3c
d1keef2
F:153-380
3d
d1keeh2
H:153-380
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
4a
d1keea2
A:936-1073
4b
d1keec2
C:936-1073
4c
d1keee2
E:936-1073
4d
d1keeg2
G:936-1073
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
(10)
Escherichia coli [TaxId: 562]
(10)
5a
d1keea3
A:1-127
5b
d1keea4
A:556-676
5c
d1keec3
C:1-127
5d
d1keec4
C:556-676
5e
d1keee3
E:1-127
5f
d1keee4
E:556-676
5g
d1keeg3
G:1-127
5h
d1keeg4
G:556-676
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Family
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d1keeb1
B:2-152
6b
d1keed1
D:2-152
6c
d1keef1
F:2-152
6d
d1keeh1
H:2-152
[
close SCOP info
]
CATH Domains
(7, 40)
Info
all CATH domains
1a: CATH_1keeA06 (A:664-686,A:757-936)
1b: CATH_1keeC06 (C:664-686,C:757-936)
1c: CATH_1keeE06 (E:664-686,E:757-936)
1d: CATH_1keeG06 (G:664-686,G:757-936)
1e: CATH_1keeA02 (A:117-140,A:211-403)
1f: CATH_1keeC02 (C:117-140,C:211-403)
1g: CATH_1keeE02 (E:117-140,E:211-403)
1h: CATH_1keeG02 (G:117-140,G:211-403)
2a: CATH_1keeA03 (A:141-210)
2b: CATH_1keeC03 (C:141-210)
2c: CATH_1keeE03 (E:141-210)
2d: CATH_1keeG03 (G:141-210)
2e: CATH_1keeA07 (A:687-756)
2f: CATH_1keeC07 (C:687-756)
2g: CATH_1keeE07 (E:687-756)
2h: CATH_1keeG07 (G:687-756)
3a: CATH_1keeA08 (A:937-1058)
3b: CATH_1keeC08 (C:937-1058)
3c: CATH_1keeE08 (E:937-1058)
3d: CATH_1keeG08 (G:937-1058)
4a: CATH_1keeA05 (A:554-663)
4b: CATH_1keeC05 (C:554-663)
4c: CATH_1keeE05 (E:554-663)
4d: CATH_1keeG05 (G:554-663)
4e: CATH_1keeA01 (A:2-116)
4f: CATH_1keeC01 (C:2-116)
4g: CATH_1keeE01 (E:2-116)
4h: CATH_1keeG01 (G:2-116)
5a: CATH_1keeB02 (B:152-379)
5b: CATH_1keeF02 (F:152-379)
5c: CATH_1keeH02 (H:152-379)
5d: CATH_1keeD02 (D:152-379)
6a: CATH_1keeB01 (B:2-151)
6b: CATH_1keeD01 (D:2-151)
6c: CATH_1keeF01 (F:2-151)
6d: CATH_1keeH01 (H:2-151)
7a: CATH_1keeA04 (A:404-553)
7b: CATH_1keeC04 (C:404-553)
7c: CATH_1keeE04 (E:404-553)
7d: CATH_1keeG04 (G:404-553)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Escherichia coli. Organism_taxid: 562.
(17)
1a
1keeA06
A:664-686,A:757-936
1b
1keeC06
C:664-686,C:757-936
1c
1keeE06
E:664-686,E:757-936
1d
1keeG06
G:664-686,G:757-936
1e
1keeA02
A:117-140,A:211-403
1f
1keeC02
C:117-140,C:211-403
1g
1keeE02
E:117-140,E:211-403
1h
1keeG02
G:117-140,G:211-403
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Escherichia coli. Organism_taxid: 562.
(15)
2a
1keeA03
A:141-210
2b
1keeC03
C:141-210
2c
1keeE03
E:141-210
2d
1keeG03
G:141-210
2e
1keeA07
A:687-756
2f
1keeC07
C:687-756
2g
1keeE07
E:687-756
2h
1keeG07
G:687-756
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1keeA08
A:937-1058
3b
1keeC08
C:937-1058
3c
1keeE08
E:937-1058
3d
1keeG08
G:937-1058
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Escherichia coli. Organism_taxid: 562.
(10)
4a
1keeA05
A:554-663
4b
1keeC05
C:554-663
4c
1keeE05
E:554-663
4d
1keeG05
G:554-663
4e
1keeA01
A:2-116
4f
1keeC01
C:2-116
4g
1keeE01
E:2-116
4h
1keeG01
G:2-116
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Escherichia coli. Organism_taxid: 562.
(10)
5a
1keeB02
B:152-379
5b
1keeF02
F:152-379
5c
1keeH02
H:152-379
5d
1keeD02
D:152-379
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.20, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(3)
6a
1keeB01
B:2-151
6b
1keeD01
D:2-151
6c
1keeF01
F:2-151
6d
1keeH01
H:2-151
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Escherichia coli. Organism_taxid: 562.
(3)
7a
1keeA04
A:404-553
7b
1keeC04
C:404-553
7c
1keeE04
E:404-553
7d
1keeG04
G:404-553
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1004 KB)
Header - Asym.Unit
Biol.Unit 1 (986 KB)
Header - Biol.Unit 1
Biol.Unit 2 (255 KB)
Header - Biol.Unit 2
Biol.Unit 3 (264 KB)
Header - Biol.Unit 3
Biol.Unit 4 (262 KB)
Header - Biol.Unit 4
Biol.Unit 5 (262 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1KEE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
