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1KDV
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (130 KB)
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(1)
Title
:
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE COMPLEXED WITH THE INHIBITOR AIAF (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)
Authors
:
A. Wlodawer, M. Li, A. Gustchina, Z. Dauter, K. Uchida, H. Oyama, N. E. Gl B. M. Dunn, K. Oda
Date
:
13 Nov 01 (Deposition) - 12 Dec 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Serine-Carboxyl Proteinase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Wlodawer, M. Li, A. Gustchina, Z. Dauter, K. Uchida, H. Oyama, N. E. Goldfarb, B. M. Dunn, K. Oda
Inhibitor Complexes Of The Pseudomonas Serine-Carboxyl Proteinase.
Biochemistry V. 40 15602 2001
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: L-PHENYLALANINOL (PHLa)
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No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
CA
1
Ligand/Ion
CALCIUM ION
3
GOL
3
Ligand/Ion
GLYCEROL
4
PHL
1
Mod. Amino Acid
L-PHENYLALANINOL
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:328 , VAL A:329 , GLY A:344 , GLY A:346 , ASP A:348 , HOH A:401
BINDING SITE FOR RESIDUE CA A 3001
2
AC2
SOFTWARE
ASN A:9 , PHE A:48 , ASN A:52 , THR A:186 , LEU A:273 , TYR A:275 , LEU A:280 , HOH A:434 , HOH A:489 , HOH A:866
BINDING SITE FOR RESIDUE GOL A 391
3
AC3
SOFTWARE
GLY A:77 , HOH B:762 , HOH B:791 , HOH B:829 , HOH B:849 , ACE B:1001 , ILE B:1002 , ALA B:1003
BINDING SITE FOR RESIDUE GOL B 392
4
AC4
SOFTWARE
ALA A:5 , ASN A:221 , GLU A:222 , HOH A:421 , HOH A:651
BINDING SITE FOR RESIDUE GOL A 393
5
AC5
SOFTWARE
GLU A:80 , SER A:133 , LEU A:134 , GLY A:135 , SER A:167 , GLY A:169 , ASP A:170 , GLU A:171 , ARG A:179 , SER A:190 , GLY A:285 , THR A:286 , SER A:287 , HOH A:637 , HOH A:851 , GOL B:392 , HOH B:708
BINDING SITE FOR CHAIN B OF AIAF PEPTIDE INHIBITOR
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SEDOLISIN (A:4-368)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SEDOLISIN
PS51695
Sedolisin domain profile.
PICP_PSESR
219-583
1
A:4-368
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kdva_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Subtilisin-like
(227)
Superfamily
:
Subtilisin-like
(227)
Family
:
Serine-carboxyl proteinase, SCP
(22)
Protein domain
:
Serine-carboxyl proteinase, SCP
(19)
Pseudomonas sp., sedolisin [TaxId: 306]
(9)
1a
d1kdva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1kdvA00 (A:3-370)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.200, no name defined]
(198)
Pseudomonas sp.. Organism_taxid: 306.
(8)
1a
1kdvA00
A:3-370
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_S8_1kdvA01 (A:29-363)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Pseudomonas sp. (strain 101) (Achromobacter parvulus T1)
(5)
1a
Peptidase_S8-1kdvA01
A:29-363
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (136 KB)
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