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Getting 'Exon' information from database.
1KDU
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
SEQUENTIAL 1H NMR ASSIGNMENTS AND SECONDARY STRUCTURE OF THE KRINGLE DOMAIN FROM UROKINASE
Authors
:
X. Li, A. M. Bokman, M. Llinas, R. A. G. Smith, C. M. Dobson
Date
:
15 Jul 93 (Deposition) - 31 Oct 93 (Release) - 01 Aug 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Plasminogen Activation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Li, A. M. Bokman, M. Llinas, R. A. Smith, C. M. Dobson
Solution Structure Of The Kringle Domain From Urokinase-Typ Plasminogen Activator.
J. Mol. Biol. V. 235 1548 1994
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(2, 2)
Info
All Sites
1: BD1 (UNKNOWN)
2: BD2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BD1
UNKNOWN
ARG A:57 , ARG A:58 , ARG A:60
NULL
2
BD2
UNKNOWN
HIS A:37 , HIS A:40
NULL
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006722 (P70L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006722
P
141
L
UROK_HUMAN
Polymorphism
2227564
A
P
70
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_2 (A:-1-80)
2: KRINGLE_1 (A:50-63)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_2
PS50070
Kringle domain profile.
UROK_HUMAN
69-151
1
A:-1-80
2
KRINGLE_1
PS00021
Kringle domain signature.
UROK_HUMAN
121-133
1
A:50-63
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Exons
(2, 2)
Info
All Exons
Exon 1.7b (A:-1-52 (gaps))
Exon 1.8 (A:52-82 (gaps))
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All Exon Boundaries
1: Boundary 1.6a/1.7b
2: Boundary 1.7b/1.8
3: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000372764
3c
ENSE00001820360
chr10:
75670915-75670976
62
UROK_HUMAN
-
0
0
-
-
1.4b
ENST00000372764
4b
ENSE00002193721
chr10:
75671283-75671370
88
UROK_HUMAN
1-19
19
0
-
-
1.5
ENST00000372764
5
ENSE00001276413
chr10:
75671799-75671826
28
UROK_HUMAN
20-29
10
0
-
-
1.6a
ENST00000372764
6a
ENSE00001169210
chr10:
75671973-75672080
108
UROK_HUMAN
29-65
37
0
-
-
1.7b
ENST00000372764
7b
ENSE00001169200
chr10:
75672682-75672856
175
UROK_HUMAN
65-123
59
1
A:-1-52 (gaps)
57
1.8
ENST00000372764
8
ENSE00000834105
chr10:
75673048-75673139
92
UROK_HUMAN
123-154
32
1
A:52-82 (gaps)
32
1.9b
ENST00000372764
9b
ENSE00001169184
chr10:
75673297-75673516
220
UROK_HUMAN
154-227
74
0
-
-
1.10
ENST00000372764
10
ENSE00001169178
chr10:
75673738-75673886
149
UROK_HUMAN
227-277
51
0
-
-
1.11
ENST00000372764
11
ENSE00001169173
chr10:
75674534-75674674
141
UROK_HUMAN
277-324
48
0
-
-
1.13
ENST00000372764
13
ENSE00001169164
chr10:
75675009-75675157
149
UROK_HUMAN
324-373
50
0
-
-
1.14d
ENST00000372764
14d
ENSE00001892698
chr10:
75676147-75677255
1109
UROK_HUMAN
374-431
58
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1kdua_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Urokinase-type plasminogen activator
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1kdua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1kduA00 (A:-1-82)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
1kduA00
A:-1-82
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Kringle_1kduA01 (A:1-80)
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Clans
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Clan
:
no clan defined [family: Kringle]
(26)
Family
:
Kringle
(26)
Homo sapiens (Human)
(19)
1a
Kringle-1kduA01
A:1-80
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Chain A
Asymmetric Unit 1
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Asym.Unit (26 KB)
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