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Getting 'Exon' information from database.
1KCG
Asym. Unit
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Asym.Unit (78 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
NKG2D IN COMPLEX WITH ULBP3
Authors
:
S. Radaev, P. Sun
Date
:
08 Nov 01 (Deposition) - 09 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein-Protein Complex, C-Type Lectin-Like Receptor, Mhc Class I-Like Molecule, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Radaev, B. Rostro, A. G. Brooks, M. Colonna, P. D. Sun
Conformational Plasticity Revealed By The Cocrystal Structure Of Nkg2D And Its Class I Mhc-Like Ligand Ulbp3.
Immunity V. 15 1039 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
1
Ligand/Ion
GLUTATHIONE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS C:11 , CYS C:109 , GLU C:110 , ASP C:112 , LEU C:174 , LEU C:178 , MET C:179
BINDING SITE FOR RESIDUE GSH C 999
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030738 (N177S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030738
N
177
S
NKG2D_HUMAN
Polymorphism
2306182
A/B
N
177
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:106-212,B:106-212)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
NKG2D_HUMAN
106-212
2
A:106-212
B:106-212
[
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Exons
(7, 10)
Info
All Exons
Exon 1.5 (- | B:93-93)
Exon 1.6a (A:94-143 | B:93-143)
Exon 1.7 (A:144-178 | B:144-178)
Exon 1.8 (A:178-215 | B:178-215)
Exon 2.3c (C:9-9)
Exon 2.4a (C:9-89)
Exon 2.5b (C:98-186)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.6a/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/-
6: Boundary -/2.3c
7: Boundary 2.3c/2.4a
8: Boundary 2.4a/2.5b
9: Boundary 2.5b/2.6a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000240618
1
ENSE00001524992
chr12:
10542640-10542542
99
NKG2D_HUMAN
-
0
0
-
-
1.2
ENST00000240618
2
ENSE00002198225
chr12:
10541474-10541370
105
NKG2D_HUMAN
1-14
14
0
-
-
1.3
ENST00000240618
3
ENSE00001656271
chr12:
10539609-10539502
108
NKG2D_HUMAN
14-50
37
0
-
-
1.4
ENST00000240618
4
ENSE00001160615
chr12:
10532391-10532299
93
NKG2D_HUMAN
50-81
32
0
-
-
1.5
ENST00000240618
5
ENSE00001160608
chr12:
10532081-10532046
36
NKG2D_HUMAN
81-93
13
1
-
B:93-93
-
1
1.6a
ENST00000240618
6a
ENSE00001160601
chr12:
10531304-10531153
152
NKG2D_HUMAN
93-143
51
2
A:94-143
B:93-143
50
51
1.7
ENST00000240618
7
ENSE00000821886
chr12:
10530834-10530731
104
NKG2D_HUMAN
144-178
35
2
A:144-178
B:144-178
35
35
1.8
ENST00000240618
8
ENSE00001160593
chr12:
10525830-10524953
878
NKG2D_HUMAN
178-216
39
2
A:178-215
B:178-215
38
38
2.3c
ENST00000367339
3c
ENSE00001444257
chr6:
150390231-150390115
117
N2DL3_HUMAN
1-30
30
1
C:9-9
1
2.4a
ENST00000367339
4a
ENSE00000896365
chr6:
150387298-150387035
264
N2DL3_HUMAN
30-118
89
1
C:9-89
81
2.5b
ENST00000367339
5b
ENSE00000896364
chr6:
150386809-150386534
276
N2DL3_HUMAN
118-210
93
1
C:98-186
89
2.6a
ENST00000367339
6a
ENSE00000896363
chr6:
150385849-150385743
107
N2DL3_HUMAN
210-244
35
0
-
-
2.7a
ENST00000367339
7a
ENSE00001444256
chr6:
150384487-150384286
202
N2DL3_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1kcga_ (A:)
1b: SCOP_d1kcgb_ (B:)
2a: SCOP_d1kcgc_ (C:)
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Classes
(
)
(
)
Folds
(
)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
NK cell-activating receptor nkg2d
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1kcga_
A:
1b
d1kcgb_
B:
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC-related molecule Ulbp3
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1kcgc_
C:
[
close SCOP info
]
CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1kcgC00 (C:9-186)
2a: CATH_1kcgB00 (B:93-215)
2b: CATH_1kcgA00 (A:94-215)
View:
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Classes
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1kcgC00
C:9-186
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
2a
1kcgB00
B:93-215
2b
1kcgA00
A:94-215
[
close CATH info
]
Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_Lectin_C_1kcgB01 (B:116-213)
1b: PFAM_Lectin_C_1kcgB02 (B:116-213)
2a: PFAM_MHC_I_1kcgC01 (C:9-185)
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Clans
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)
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)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Homo sapiens (Human)
(39)
1a
Lectin_C-1kcgB01
B:116-213
1b
Lectin_C-1kcgB02
B:116-213
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-1kcgC01
C:9-185
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