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1KAC
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
KNOB DOMAIN FROM ADENOVIRUS SEROTYPE 12 IN COMPLEX WITH DOMAIN 1 OF ITS CELLULAR RECEPTOR CAR
Authors
:
M. C. Bewley, K. Springer, Y. B. Zhang, P. Freimuth, J. M. Flanagan
Date
:
05 May 99 (Deposition) - 24 Nov 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Adhesion Protein Receptor Complex, Viral Protein/Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. C. Bewley, K. Springer, Y. B. Zhang, P. Freimuth, J. M. Flanagan
Structural Analysis Of The Mechanism Of Adenovirus Binding To Its Human Cellular Receptor, Car.
Science V. 286 1579 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(3, 3)
Info
All Exons
Exon 1.4b (B:23-72)
Exon 1.5 (B:73-141)
Exon 1.6 (B:141-146)
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All Exon Boundaries
1: Boundary 1.1a/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284878
1a
ENSE00001356018
chr21:
18884700-18885490
791
CXAR_HUMAN
1-15
15
0
-
-
1.4b
ENST00000284878
4b
ENSE00001370254
chr21:
18919345-18919511
167
CXAR_HUMAN
15-70
56
1
B:23-72
50
1.5
ENST00000284878
5
ENSE00001016957
chr21:
18924067-18924271
205
CXAR_HUMAN
71-139
69
1
B:73-141
69
1.6
ENST00000284878
6
ENSE00001016954
chr21:
18931294-18931449
156
CXAR_HUMAN
139-191
53
1
B:141-146
6
1.7
ENST00000284878
7
ENSE00001016953
chr21:
18933020-18933142
123
CXAR_HUMAN
191-232
42
0
-
-
1.8
ENST00000284878
8
ENSE00001016956
chr21:
18933656-18933794
139
CXAR_HUMAN
232-278
47
0
-
-
1.9f
ENST00000284878
9f
ENSE00001918181
chr21:
18937746-18942418
4673
CXAR_HUMAN
278-365
88
0
-
-
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SCOP Domains
(2, 2)
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All SCOP Domains
1a: SCOP_d1kacb_ (B:)
2a: SCOP_d1kaca_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Coxsackie virus and adenovirus receptor (Car), domain 1
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1kacb_
B:
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Adenovirus fiber protein knob domain
(27)
Protein domain
:
Adenovirus fiber protein knob domain
(14)
Human adenovirus type 12 [TaxId: 28282]
(4)
2a
d1kaca_
A:
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CATH Domains
(2, 2)
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all CATH domains
1a: CATH_1kacA00 (A:403-587)
2a: CATH_1kacB00 (B:23-146)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
(25)
Homologous Superfamily
:
Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
(24)
Human adenovirus 12. Organism_taxid: 28282. Variant: serotype 12.
(2)
1a
1kacA00
A:403-587
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human adenovirus 12. Organism_taxid: 28282. Variant: serotype 12.
(1)
2a
1kacB00
B:23-146
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_V_set_1kacB01 (B:24-139)
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Clan
:
Ig
(577)
Family
:
V-set
(144)
Homo sapiens (Human)
(61)
1a
V-set-1kacB01
B:24-139
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Asymmetric Unit 1
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Asym.Unit (55 KB)
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