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1K9K
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CALCIUM BOUND HUMAN S100A6
Authors
:
L. R. Otterbein, R. Dominguez
Date
:
29 Oct 01 (Deposition) - 10 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
S100A6, Calcyclin, Calcium Regulatory Protein, Calcium Bound, Cacy, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. R. Otterbein, J. Kordowska, C. Witte-Hoffmann, C. L. Wang, R. Dominguez
Crystal Structures Of S100A6 In The Ca(2+)-Free And Ca(2+)-Bound States: The Calcium Sensor Mechanism Of S100 Proteins Revealed At Atomic Resolution.
Structure V. 10 557 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CA
4
Ligand/Ion
CALCIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:20 , GLU A:23 , ASP A:25 , THR A:28 , GLU A:33 , HOH A:409
BINDING SITE FOR RESIDUE CA A 300
2
AC2
SOFTWARE
ASP A:61 , ASN A:63 , ASP A:65 , GLU A:67 , GLU A:72 , HOH A:401
BINDING SITE FOR RESIDUE CA A 400
3
AC3
SOFTWARE
SER B:20 , GLU B:23 , ASP B:25 , THR B:28 , GLU B:33 , HOH B:402
BINDING SITE FOR RESIDUE CA B 300
4
AC4
SOFTWARE
ASP B:61 , ASN B:63 , ASP B:65 , GLU B:67 , GLU B:72 , HOH B:416
BINDING SITE FOR RESIDUE CA B 400
5
AC5
SOFTWARE
CYS A:3 , HOH A:452 , LYS B:40
BINDING SITE FOR RESIDUE BME A 100
6
AC6
SOFTWARE
LYS A:40 , CYS B:3
BINDING SITE FOR RESIDUE BME B 200
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011982 (H27R, chain A/B, )
2: VAR_011983 (N69S, chain A/B, )
3: VAR_011984 (I83T, chain A/B, )
4: VAR_029281 (G90D, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011982
H
27
R
S10A6_HUMAN
Polymorphism
11974
A/B
H
27
R
2
UniProt
VAR_011983
N
69
S
S10A6_HUMAN
Polymorphism
1802581
A/B
N
69
S
3
UniProt
VAR_011984
I
83
T
S10A6_HUMAN
Polymorphism
1802582
A/B
I
83
T
4
UniProt
VAR_029281
G
90
D
S10A6_HUMAN
Polymorphism
2228293
A/B
G
90
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:48-83,B:48-83)
2: S100_CABP (A:56-77,B:56-77)
3: EF_HAND_1 (A:61-73,B:61-73)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S10A6_HUMAN
48-83
2
A:48-83
B:48-83
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S10A6_HUMAN
56-77
2
A:56-77
B:56-77
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S10A6_HUMAN
61-73
2
A:61-73
B:61-73
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Exons
(2, 4)
Info
All Exons
Exon 1.2c (A:2-46 | B:2-46)
Exon 1.3b (A:47-90 | B:47-90)
View:
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All Exon Boundaries
1: Boundary 1.1e/1.2c
2: Boundary 1.2c/1.3b
3: Boundary 1.3b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000368720
1a
ENSE00001447842
chr1:
153508720-153508584
137
S10A6_HUMAN
-
0
0
-
-
1.1e
ENST00000368720
1e
ENSE00001447841
chr1:
153508409-153508264
146
S10A6_HUMAN
-
0
0
-
-
1.2c
ENST00000368720
2c
ENSE00002178082
chr1:
153507835-153507678
158
S10A6_HUMAN
1-46
46
2
A:2-46
B:2-46
45
45
1.3b
ENST00000368720
3b
ENSE00001447839
chr1:
153507306-153507075
232
S10A6_HUMAN
47-90
44
2
A:47-90
B:47-90
44
44
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1k9ka_ (A:)
1b: SCOP_d1k9kb_ (B:)
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)
Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Human (Homo sapiens), s100a6 [TaxId: 9606]
(4)
1a
d1k9ka_
A:
1b
d1k9kb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1k9kA00 (A:2-90)
1b: CATH_1k9kB00 (B:2-90)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1k9kA00
A:2-90
1b
1k9kB00
B:2-90
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (37 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
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