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1K9E
Asym. Unit
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Asym.Unit (129 KB)
Biol.Unit 1 (245 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MUTATED FAMILY-67 ALPHA-D-GLUCURONIDASE (E285N) FROM BACILLUS STEAROTHERMOPHILUS T-6, COMPLEXED WITH 4-O-METHYL-GLUCURONIC ACID
Authors
:
G. Golan, D. Shallom, A. Teplitsky, G. Zaide, S. Shulami, T. Baasov, V. S A. Thompson, Y. Shoham, G. Shoham
Date
:
29 Oct 01 (Deposition) - 29 Oct 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Golan, D. Shallom, A. Teplitsky, G. Zaide, S. Shulami, T. Baasov, V. Stojanoff, A. Thompson, Y. Shoham, G. Shoham
Crystal Structures Of Geobacillus Stearothermophilus {Alpha}-Glucuronidase Complexed With Its Substrate And Products: Mechanistic Implications.
J. Biol. Chem. V. 279 3014 2004
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 4-O-METHYL-ALPHA-D-GLUCURONIC ACID (GCVa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GCV
1
Ligand/Ion
4-O-METHYL-ALPHA-D-GLUCURONIC ACID
2
GOL
11
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:150 , GLU A:158 , ARG A:159 , VAL A:200 , ASN A:201 , LYS A:281 , ARG A:318 , PHE A:320 , LYS A:359 , ASP A:364 , GLU A:392 , GOL A:804 , HOH A:1108
BINDING SITE FOR RESIDUE GCV A 701
02
AC2
SOFTWARE
TYR A:91 , TYR A:116 , HIS A:120 , ARG A:123 , SER A:189 , VAL A:190 , GLY A:191 , ARG A:467 , TRP A:470 , HOH A:1080 , HOH A:1173
BINDING SITE FOR RESIDUE GOL A 801
03
AC3
SOFTWARE
TRP A:68 , GLU A:75 , GLU A:76 , PHE A:77 , ARG A:94 , TYR A:105 , HOH A:1340
BINDING SITE FOR RESIDUE GOL A 802
04
AC4
SOFTWARE
ARG A:368 , GLU A:369 , VAL A:371 , GLU A:409 , LEU A:585 , HOH A:1054 , HOH A:1137 , HOH A:1179 , HOH A:1305
BINDING SITE FOR RESIDUE GOL A 803
05
AC5
SOFTWARE
PHE A:320 , TYR A:322 , ARG A:335 , ASP A:364 , TRP A:520 , HIS A:527 , TYR A:535 , TRP A:540 , GCV A:701 , HOH A:1108 , HOH A:1244
BINDING SITE FOR RESIDUE GOL A 804
06
AC6
SOFTWARE
GLN A:55 , ALA A:309 , GLY A:312 , GLY A:313 , GLU A:352 , ASN A:353 , TYR A:437
BINDING SITE FOR RESIDUE GOL A 805
07
AC7
SOFTWARE
GLN A:326 , THR A:333 , ASP A:334 , ARG A:335 , GLY A:541 , THR A:542 , TYR A:543 , TYR A:545 , VAL A:553 , ARG A:555 , HOH A:1512
BINDING SITE FOR RESIDUE GOL A 806
08
AC8
SOFTWARE
GLU A:256 , ARG A:259 , GLY A:674 , ARG A:675 , LYS A:676
BINDING SITE FOR RESIDUE GOL A 807
09
AC9
SOFTWARE
SER A:19 , GLU A:129 , HOH A:1158 , HOH A:1416 , HOH A:1482
BINDING SITE FOR RESIDUE GOL A 808
10
BC1
SOFTWARE
TYR A:340 , LYS A:344 , ALA A:377 , ALA A:565 , GLN A:566 , TYR A:567 , PHE A:568 , HOH A:1232
BINDING SITE FOR RESIDUE GOL A 809
11
BC2
SOFTWARE
THR A:332 , THR A:333 , ASP A:334 , ALA A:338 , ASP A:341
BINDING SITE FOR RESIDUE GOL A 810
12
BC3
SOFTWARE
LEU A:81 , SER A:135
BINDING SITE FOR RESIDUE GOL A 811
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1k9ea2 (A:4-142)
2a: SCOP_d1k9ea1 (A:143-679)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Bacillus stearothermophilus [TaxId: 1422]
(7)
1a
d1k9ea2
A:4-142
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Bacillus stearothermophilus [TaxId: 1422]
(7)
2a
d1k9ea1
A:143-679
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1k9eA01 (A:16-140)
2a: CATH_1k9eA02 (A:141-473)
3a: CATH_1k9eA03 (A:474-679)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: t6.
(2)
1a
1k9eA01
A:16-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: t6.
(2)
2a
1k9eA02
A:141-473
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: t6.
(2)
3a
1k9eA03
A:474-679
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_67C_1k9eA01 (A:453-678)
2a: PFAM_Glyco_hydro_67M_1k9eA02 (A:122-452)
3a: PFAM_Glyco_hydro_67N_1k9eA03 (A:8-121)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glyco_hydro_67C]
(5)
Family
:
Glyco_hydro_67C
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
1a
Glyco_hydro_67C-1k9eA01
A:453-678
Clan
:
no clan defined [family: Glyco_hydro_67M]
(5)
Family
:
Glyco_hydro_67M
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
2a
Glyco_hydro_67M-1k9eA02
A:122-452
Clan
:
no clan defined [family: Glyco_hydro_67N]
(5)
Family
:
Glyco_hydro_67N
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
3a
Glyco_hydro_67N-1k9eA03
A:8-121
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Asymmetric Unit 1
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