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1K9A
Biol. Unit 3
Info
Asym.Unit (436 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
Biol.Unit 5 (77 KB)
Biol.Unit 6 (76 KB)
Biol.Unit 7 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF FULL-LENGTH CARBOXYL-TERMINAL SRC KINASE AT 2.5 A RESOLUTION
Authors
:
A. Ogawa, Y. Takayama, A. Nagata, K. T. Chong, S. Takeuchi, H. Sakai, A. Nakagawa, S. Nada, M. Okada, T. Tsukihara
Date
:
28 Oct 01 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: C,D (1x)
Keywords
:
Carboxyl-Terminal Src Kinase, Cooh-Terminal Src Kinase, Csk, Src, Sfk, Signal Transduction, Sh2, Sh3, Src Homology, Tyrosine Kinase, Cytoplasmic Tyrosine Kinase, Cbp, Oncogene, Cancer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ogawa, Y. Takayama, H. Sakai, K. T. Chong, S. Takeuchi, A. Nakagawa, S. Nada, M. Okada, T. Tsukihara
Structure Of The Carboxyl-Terminal Src Kinase, Csk.
J. Biol. Chem. V. 277 14351 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: SH3 (C:9-70)
2: SH2 (C:82-171)
3: PROTEIN_KINASE_ATP (C:201-222)
4: PROTEIN_KINASE_TYR (C:310-322)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
CSK_RAT
9-70
1
-
-
C:9-70
-
-
-
2
SH2
PS50001
Src homology 2 (SH2) domain profile.
CSK_RAT
82-171
1
-
-
C:82-171
-
-
-
3
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CSK_RAT
201-222
1
-
-
C:201-222
-
-
-
4
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
CSK_RAT
310-322
1
-
-
C:310-322
-
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 18)
Info
All SCOP Domains
1a: SCOP_d1k9aa1 (A:6-76)
1b: SCOP_d1k9ab1 (B:4-76)
1c: SCOP_d1k9ac1 (C:6-76)
1d: SCOP_d1k9ad1 (D:6-76)
1e: SCOP_d1k9ae1 (E:6-76)
1f: SCOP_d1k9af1 (F:6-76)
2a: SCOP_d1k9aa3 (A:178-450)
2b: SCOP_d1k9ab3 (B:178-450)
2c: SCOP_d1k9ac3 (C:178-450)
2d: SCOP_d1k9ad3 (D:178-450)
2e: SCOP_d1k9ae3 (E:178-450)
2f: SCOP_d1k9af3 (F:178-450)
3a: SCOP_d1k9aa2 (A:77-177)
3b: SCOP_d1k9ab2 (B:77-177)
3c: SCOP_d1k9ac2 (C:77-177)
3d: SCOP_d1k9ad2 (D:77-177)
3e: SCOP_d1k9ae2 (E:77-177)
3f: SCOP_d1k9af2 (F:77-177)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Carboxyl-terminal src kinase (csk)
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1k9aa1
A:6-76
1b
d1k9ab1
B:4-76
1c
d1k9ac1
C:6-76
1d
d1k9ad1
D:6-76
1e
d1k9ae1
E:6-76
1f
d1k9af1
F:6-76
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Carboxyl-terminal src kinase (csk)
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1k9aa3
A:178-450
2b
d1k9ab3
B:178-450
2c
d1k9ac3
C:178-450
2d
d1k9ad3
D:178-450
2e
d1k9ae3
E:178-450
2f
d1k9af3
F:178-450
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Carboxyl-terminal src kinase (csk)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1k9aa2
A:77-177
3b
d1k9ab2
B:77-177
3c
d1k9ac2
C:77-177
3d
d1k9ad2
D:77-177
3e
d1k9ae2
E:77-177
3f
d1k9af2
F:77-177
[
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]
CATH Domains
(4, 24)
Info
all CATH domains
1a: CATH_1k9aA03 (A:187-272)
1b: CATH_1k9aB03 (B:187-272)
1c: CATH_1k9aC03 (C:187-272)
1d: CATH_1k9aD03 (D:187-272)
1e: CATH_1k9aE03 (E:187-272)
1f: CATH_1k9aF03 (F:187-272)
2a: CATH_1k9aA02 (A:86-171)
2b: CATH_1k9aB02 (B:86-171)
2c: CATH_1k9aC02 (C:86-171)
2d: CATH_1k9aE02 (E:86-171)
2e: CATH_1k9aF02 (F:86-171)
2f: CATH_1k9aD02 (D:86-171)
3a: CATH_1k9aF04 (F:273-450)
3b: CATH_1k9aD04 (D:273-443)
3c: CATH_1k9aE04 (E:273-443)
3d: CATH_1k9aA04 (A:273-443)
3e: CATH_1k9aB04 (B:273-443)
3f: CATH_1k9aC04 (C:273-443)
4a: CATH_1k9aA01 (A:6-67)
4b: CATH_1k9aB01 (B:6-67)
4c: CATH_1k9aC01 (C:6-67)
4d: CATH_1k9aD01 (D:6-67)
4e: CATH_1k9aE01 (E:6-67)
4f: CATH_1k9aF01 (F:6-67)
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)
(
)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Norway rat (Rattus norvegicus)
(16)
1a
1k9aA03
A:187-272
1b
1k9aB03
B:187-272
1c
1k9aC03
C:187-272
1d
1k9aD03
D:187-272
1e
1k9aE03
E:187-272
1f
1k9aF03
F:187-272
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Norway rat (Rattus norvegicus)
(4)
2a
1k9aA02
A:86-171
2b
1k9aB02
B:86-171
2c
1k9aC02
C:86-171
2d
1k9aE02
E:86-171
2e
1k9aF02
F:86-171
2f
1k9aD02
D:86-171
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Norway rat (Rattus norvegicus)
(19)
3a
1k9aF04
F:273-450
3b
1k9aD04
D:273-443
3c
1k9aE04
E:273-443
3d
1k9aA04
A:273-443
3e
1k9aB04
B:273-443
3f
1k9aC04
C:273-443
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Norway rat (Rattus norvegicus)
(12)
4a
1k9aA01
A:6-67
4b
1k9aB01
B:6-67
4c
1k9aC01
C:6-67
4d
1k9aD01
D:6-67
4e
1k9aE01
E:6-67
4f
1k9aF01
F:6-67
[
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]
Pfam Domains
(3, 18)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_1k9aF01 (F:195-440)
1b: PFAM_Pkinase_Tyr_1k9aF02 (F:195-440)
1c: PFAM_Pkinase_Tyr_1k9aF03 (F:195-440)
1d: PFAM_Pkinase_Tyr_1k9aF04 (F:195-440)
1e: PFAM_Pkinase_Tyr_1k9aF05 (F:195-440)
1f: PFAM_Pkinase_Tyr_1k9aF06 (F:195-440)
2a: PFAM_SH3_1_1k9aF07 (F:15-62)
2b: PFAM_SH3_1_1k9aF08 (F:15-62)
2c: PFAM_SH3_1_1k9aF09 (F:15-62)
2d: PFAM_SH3_1_1k9aF10 (F:15-62)
2e: PFAM_SH3_1_1k9aF11 (F:15-62)
2f: PFAM_SH3_1_1k9aF12 (F:15-62)
3a: PFAM_SH2_1k9aF13 (F:82-156)
3b: PFAM_SH2_1k9aF14 (F:82-156)
3c: PFAM_SH2_1k9aF15 (F:82-156)
3d: PFAM_SH2_1k9aF16 (F:82-156)
3e: PFAM_SH2_1k9aF17 (F:82-156)
3f: PFAM_SH2_1k9aF18 (F:82-156)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Rattus norvegicus (Rat)
(2)
1a
Pkinase_Tyr-1k9aF01
F:195-440
1b
Pkinase_Tyr-1k9aF02
F:195-440
1c
Pkinase_Tyr-1k9aF03
F:195-440
1d
Pkinase_Tyr-1k9aF04
F:195-440
1e
Pkinase_Tyr-1k9aF05
F:195-440
1f
Pkinase_Tyr-1k9aF06
F:195-440
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Rattus norvegicus (Rat)
(6)
2a
SH3_1-1k9aF07
F:15-62
2b
SH3_1-1k9aF08
F:15-62
2c
SH3_1-1k9aF09
F:15-62
2d
SH3_1-1k9aF10
F:15-62
2e
SH3_1-1k9aF11
F:15-62
2f
SH3_1-1k9aF12
F:15-62
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Rattus norvegicus (Rat)
(3)
3a
SH2-1k9aF13
F:82-156
3b
SH2-1k9aF14
F:82-156
3c
SH2-1k9aF15
F:82-156
3d
SH2-1k9aF16
F:82-156
3e
SH2-1k9aF17
F:82-156
3f
SH2-1k9aF18
F:82-156
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