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1K8Q
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DOG GASTRIC LIPASE IN COMPLEX WITH A PHOSPHONATE INHIBITOR
Authors
:
A. Roussel, N. Miled, L. Berti-Dupuis, M. Riviere, S. Spinelli, P. Bern V. Gruber, R. Verger, C. Cambillau
Date
:
25 Oct 01 (Deposition) - 06 Mar 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Apha Beta Hydrolase Fold, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Roussel, N. Miled, L. Berti-Dupuis, M. Riviere, S. Spinelli, P. Berna, V. Gruber, R. Verger, C. Cambillau
Crystal Structure Of The Open Form Of Dog Gastric Lipase In Complex With A Phosphonate Inhibitor.
J. Biol. Chem. V. 277 2266 2002
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: UNDECYL-PHOSPHINIC ACID BUTYL ESTE... (C11a)
2b: UNDECYL-PHOSPHINIC ACID BUTYL ESTE... (C11b)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
C11
2
Ligand/Ion
UNDECYL-PHOSPHINIC ACID BUTYL ESTER
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:15 , GLN A:18 , GLU A:29 , HOH A:2108
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
ASN A:80 , GLN A:364 , HOH A:2099 , HOH A:2120
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
ASN A:9 , LEU A:78 , ASN A:81 , ASN A:252 , ARG A:255 , MET A:360 , HOH A:2014
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
TYR A:306 , ASN A:308 , HOH A:2044 , HOH A:2110 , HOH A:2134
BINDING SITE FOR RESIDUE NAG A 1005
05
AC5
SOFTWARE
ASN B:15 , GLN B:18 , GLU B:29 , HOH B:2021 , HOH B:2094 , HOH B:2165
BINDING SITE FOR RESIDUE NAG B 1001
06
AC6
SOFTWARE
ASN B:80 , PRO B:363 , GLN B:364 , HOH B:2057 , HOH B:2171
BINDING SITE FOR RESIDUE NAG B 1002
07
AC7
SOFTWARE
ASN B:9 , LEU B:78 , ASN B:81 , ASN B:252 , ARG B:255 , MET B:360 , HOH B:2026 , HOH B:2052 , HOH B:2134
BINDING SITE FOR RESIDUE NAG B 1003
08
AC8
SOFTWARE
TYR B:306 , ASN B:308 , HOH B:2105 , HOH B:2170
BINDING SITE FOR RESIDUE NAG B 1005
09
AC9
SOFTWARE
TYR A:213 , LEU A:260 , HOH A:2020 , HOH A:2082 , HOH A:2139
BINDING SITE FOR RESIDUE BOG A 1006
10
BC1
SOFTWARE
TYR B:213 , LEU B:260 , HOH B:2078 , HOH B:2089 , HOH B:2090
BINDING SITE FOR RESIDUE BOG B 2002
11
BC2
SOFTWARE
GLY A:66 , LEU A:67 , SER A:153 , GLN A:154 , ILE A:192 , MET A:196 , LEU A:326 , HIS A:353
BINDING SITE FOR RESIDUE C11 A 2001
12
BC3
SOFTWARE
GLY B:66 , LEU B:67 , SER B:153 , GLN B:154 , ILE B:192 , MET B:196 , TRP B:275 , LEU B:326 , HIS B:353
BINDING SITE FOR RESIDUE C11 B 2001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:147-156,B:147-156)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPG_CANLF
166-175
2
A:147-156
B:147-156
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1k8qa_ (A:)
1b: SCOP_d1k8qb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Gastric lipase
(2)
Protein domain
:
Gastric lipase
(2)
Dog (Canis familiaris) [TaxId: 9615]
(1)
1a
d1k8qa_
A:
1b
d1k8qb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1k8qA00 (A:1-377)
1b: CATH_1k8qB00 (B:1-377)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Dog (Canis lupus familiaris)
(2)
1a
1k8qA00
A:1-377
1b
1k8qB00
B:1-377
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
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