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1K8M
Asym. Unit
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Asym.Unit (30 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE LIPOIC ACID-BEARING DOMAIN OF THE E2 COMPONENT OF HUMAN, MITOCHONDRIAL BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE
Authors
:
C. -F. Chang, H. -T. Chou, J. L. Chuang, D. T. Chuang, T. -H. Huang
Date
:
24 Oct 01 (Deposition) - 14 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Lipoyl Acid Bearing, Human Bckd, Experimental Nmr Data, Average Structure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. -F. Chang, H. -T. Chou, J. L. Chuang, D. T. Chuang, T. -H. Huang
Solution Structure And Dynamics Of The Lipoic Acid-Bearing Domain Of Human Mitochondrial Branched-Chain Alpha-Keto Acid Dehydrogenase Complex
J. Biol. Chem. V. 277 15865 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015099 (I38M, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015099
I
98
M
ODB2_HUMAN
Disease (MSUD2)
---
A
I
38
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BIOTINYL_LIPOYL (A:4-79)
2: LIPOYL (A:29-58)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIOTINYL_LIPOYL
PS50968
Biotinyl/lipoyl domain profile.
ODB2_HUMAN
64-139
1
A:4-79
2
LIPOYL
PS00189
2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
ODB2_HUMAN
89-118
1
A:29-58
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:1-24)
Exon 1.4 (A:24-85)
Exon 1.5 (A:85-87)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370132
1a
ENSE00001451903
chr1:
100715390-100715326
65
ODB2_HUMAN
1-17
17
0
-
-
1.2
ENST00000370132
2
ENSE00000831299
chr1:
100706440-100706317
124
ODB2_HUMAN
18-59
42
0
-
-
1.3
ENST00000370132
3
ENSE00000831298
chr1:
100701067-100700992
76
ODB2_HUMAN
59-84
26
1
A:1-24
24
1.4
ENST00000370132
4
ENSE00000831297
chr1:
100696470-100696289
182
ODB2_HUMAN
84-145
62
1
A:24-85
62
1.5
ENST00000370132
5
ENSE00000831296
chr1:
100684303-100684182
122
ODB2_HUMAN
145-185
41
1
A:85-87
3
1.6
ENST00000370132
6
ENSE00000831295
chr1:
100681755-100681539
217
ODB2_HUMAN
186-258
73
0
-
-
1.7
ENST00000370132
7
ENSE00000831294
chr1:
100680539-100680373
167
ODB2_HUMAN
258-313
56
0
-
-
1.8b
ENST00000370132
8b
ENSE00000831293
chr1:
100676327-100676250
78
ODB2_HUMAN
314-339
26
0
-
-
1.9
ENST00000370132
9
ENSE00000831292
chr1:
100672192-100672001
192
ODB2_HUMAN
340-403
64
0
-
-
1.10
ENST00000370132
10
ENSE00000831291
chr1:
100671857-100671786
72
ODB2_HUMAN
404-427
24
0
-
-
1.11
ENST00000370132
11
ENSE00001451905
chr1:
100661978-100659736
2243
ODB2_HUMAN
428-482
55
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1k8ma_ (A:)
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Single hybrid motif
(49)
Family
:
Biotinyl/lipoyl-carrier proteins and domains
(40)
Protein domain
:
Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1k8ma_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1k8mA00 (A:1-87)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Human (Homo sapiens)
(4)
1a
1k8mA00
A:1-87
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Pfam Domains
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Chain A
Asymmetric Unit 1
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