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1K7V
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF CROSSLINKED-WGA3/GLCNACBETA1,6GALBETA1, 4GLC
Authors
:
M. Muraki, M. Ishimura, K. Harata
Date
:
22 Oct 01 (Deposition) - 03 Apr 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Hevein-Type Fold, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Muraki, M. Ishimura, K. Harata
Interactions Of Wheat-Germ Agglutinin With Glcnac Beta 1, 6Gal Sequence
Biochim. Biophys. Acta V. 1569 10 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PCA
2
Mod. Amino Acid
PYROGLUTAMIC ACID
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:62 , TYR A:64 , HIS A:66 , TYR A:73 , GAL A:188 , BGC A:189 , HOH A:228 , SER B:114 , GLU B:115
BINDING SITE FOR RESIDUE NAG A 187
2
AC2
SOFTWARE
TYR A:64 , NAG A:187 , BGC A:189 , HOH A:219
BINDING SITE FOR RESIDUE GAL A 188
3
AC3
SOFTWARE
TYR A:64 , NAG A:187 , GAL A:188 , HOH A:230 , ARG B:2 , TYR B:23 , HOH B:204
BINDING SITE FOR RESIDUE BGC A 189
4
AC4
SOFTWARE
SER A:114 , GLU A:115 , SER B:62 , TYR B:64 , HIS B:66 , TYR B:73 , GAL B:188 , BGC B:189 , HOH B:218
BINDING SITE FOR RESIDUE NAG B 187
5
AC5
SOFTWARE
TYR B:64 , NAG B:187 , BGC B:189
BINDING SITE FOR RESIDUE GAL B 188
6
AC6
SOFTWARE
ARG A:2 , TYR A:23 , SER A:114 , GLU A:115 , NAG B:187 , GAL B:188
BINDING SITE FOR RESIDUE BGC B 189
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: CHIT_BIND_I_2 (A:2-42,B:2-42|A:43-85,B:43-85|A:86...)
2: CHIT_BIND_I_1 (A:12-31,B:12-31|A:55-74,B:55-74|A:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHIT_BIND_I_2
PS50941
Chitin-binding type-1 domain profile.
AGI3_WHEAT
1-42
43-85
86-128
129-171
8
A:2-42
B:2-42
A:43-85
B:43-85
A:86-128
B:86-128
A:129-171
B:129-171
2
CHIT_BIND_I_1
PS00026
Chitin recognition or binding domain signature.
AGI3_WHEAT
12-31
55-74
98-117
141-160
8
A:12-31
B:12-31
A:55-74
B:55-74
A:98-117
B:98-117
A:141-160
B:141-160
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1k7va1 (A:1-52)
1b: SCOP_d1k7va2 (A:53-86)
1c: SCOP_d1k7va3 (A:87-129)
1d: SCOP_d1k7va4 (A:130-171)
1e: SCOP_d1k7vb1 (B:1-52)
1f: SCOP_d1k7vb2 (B:53-86)
1g: SCOP_d1k7vb3 (B:87-129)
1h: SCOP_d1k7vb4 (B:130-171)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Plant lectins/antimicrobial peptides
(31)
Family
:
Hevein-like agglutinin (lectin) domain
(28)
Protein domain
:
Wheat germ agglutinin (WGA)
(12)
Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
(12)
1a
d1k7va1
A:1-52
1b
d1k7va2
A:53-86
1c
d1k7va3
A:87-129
1d
d1k7va4
A:130-171
1e
d1k7vb1
B:1-52
1f
d1k7vb2
B:53-86
1g
d1k7vb3
B:87-129
1h
d1k7vb4
B:130-171
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1k7vA02 (A:43-85)
1b: CATH_1k7vB02 (B:43-85)
1c: CATH_1k7vA03 (A:86-128)
1d: CATH_1k7vB03 (B:86-128)
1e: CATH_1k7vA01 (A:2-42)
1f: CATH_1k7vB01 (B:2-42)
1g: CATH_1k7vA04 (A:129-171)
1h: CATH_1k7vB04 (B:129-171)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.10, no name defined]
(23)
Bread wheat (Triticum aestivum)
(10)
1a
1k7vA02
A:43-85
1b
1k7vB02
B:43-85
1c
1k7vA03
A:86-128
1d
1k7vB03
B:86-128
1e
1k7vA01
A:2-42
1f
1k7vB01
B:2-42
1g
1k7vA04
A:129-171
1h
1k7vB04
B:129-171
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Chitin_bind_1_1k7vB01 (B:129-169)
1b: PFAM_Chitin_bind_1_1k7vB02 (B:129-169)
1c: PFAM_Chitin_bind_1_1k7vB03 (B:129-169)
1d: PFAM_Chitin_bind_1_1k7vB04 (B:129-169)
1e: PFAM_Chitin_bind_1_1k7vB05 (B:129-169)
1f: PFAM_Chitin_bind_1_1k7vB06 (B:129-169)
1g: PFAM_Chitin_bind_1_1k7vB07 (B:129-169)
1h: PFAM_Chitin_bind_1_1k7vB08 (B:129-169)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Chitin_bind_1]
(17)
Family
:
Chitin_bind_1
(17)
Triticum aestivum (Wheat)
(8)
1a
Chitin_bind_1-1k7vB01
B:129-169
1b
Chitin_bind_1-1k7vB02
B:129-169
1c
Chitin_bind_1-1k7vB03
B:129-169
1d
Chitin_bind_1-1k7vB04
B:129-169
1e
Chitin_bind_1-1k7vB05
B:129-169
1f
Chitin_bind_1-1k7vB06
B:129-169
1g
Chitin_bind_1-1k7vB07
B:129-169
1h
Chitin_bind_1-1k7vB08
B:129-169
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