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1K7L
Biol. Unit 2
Info
Asym.Unit (195 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PPARALPHA LIGAND BINDING DOMAIN BOUND WITH GW409544 AND A CO-ACTIVATOR PEPTIDE.
Authors
:
H. E. Xu, M. H. Lambert, V. G. Montana, L. B. Moore, J. L. Collins, J. A. Oplinger, S. A. Kliewer, R. T. Gampe Jr. , D. D. Mckee, J. T. Moore, T. M. Willson
Date
:
19 Oct 01 (Deposition) - 05 Dec 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
The 2. 5 Angstrom Resolution Crystal Structure Of The Human Pparalpha Ligand Binding Domain Bound With Gw409544 And A Coactivator Peptide, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. E. Xu, M. H. Lambert, V. G. Montana, K. D. Plunket, L. B. Moore, J. L. Collins, J. A. Oplinger, S. A. Kliewer, R. T. Gampe Jr. , D. D. Mckee, J. T. Moore, T. M. Willson
Structural Determinants Of Ligand Binding Selectivity Between The Peroxisome Proliferator-Activated Receptors.
Proc. Natl. Acad. Sci. Usa V. 98 13919 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLA... (544a)
1b: 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLA... (544b)
1c: 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLA... (544c)
1d: 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLA... (544d)
2a: YTTRIUM (III) ION (YT3a)
2b: YTTRIUM (III) ION (YT3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
544
1
Ligand/Ion
2-(1-METHYL-3-OXO-3-PHENYL-PROPYLAMINO)-3-{4-[2-(5-METHYL-2-PHENYL-OXAZOL-4-YL)-ETHOXY]-PHENYL}-PROPIONIC ACID
2
YT3
1
Ligand/Ion
YTTRIUM (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:267 , GLU A:451 , ASP A:453 , GLU C:267 , GLU C:451 , ASP C:453
BINDING SITE FOR RESIDUE YT3 C 469
2
AC4
SOFTWARE
LEU C:247 , GLU C:269 , PHE C:273 , CYS C:275 , CYS C:276 , GLN C:277 , SER C:280 , TYR C:314 , MET C:330 , VAL C:332 , LEU C:347 , PHE C:351 , ILE C:354 , HIS C:440 , VAL C:444 , TYR C:464 , HOH C:527
BINDING SITE FOR RESIDUE 544 C 470
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016112 (V227A, chain C, )
2: VAR_016113 (A268V, chain C, )
3: VAR_016114 (D304N, chain C, )
4: VAR_050578 (G395R, chain C, )
5: VAR_016115 (R409T, chain C, )
6: VAR_019772 (E685A, chain D, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016112
V
227
A
PPARA_HUMAN
Polymorphism
1800234
C
V
227
A
2
UniProt
VAR_016113
A
268
V
PPARA_HUMAN
Polymorphism
1042311
C
A
268
V
3
UniProt
VAR_016114
D
304
N
PPARA_HUMAN
Polymorphism
1800242
C
D
304
N
4
UniProt
VAR_050578
G
395
R
PPARA_HUMAN
Polymorphism
2229245
C
G
395
R
5
UniProt
VAR_016115
R
409
T
PPARA_HUMAN
Polymorphism
1800243
C
R
409
T
6
UniProt
VAR_019772
E
685
A
NCOA1_HUMAN
Polymorphism
1049021
D
E
685
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1k7la_ (A:)
1b: SCOP_d1k7lc_ (C:)
1c: SCOP_d1k7le_ (E:)
1d: SCOP_d1k7lg_ (G:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor alpha, PPAR-alpha
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1k7la_
A:
1b
d1k7lc_
C:
1c
d1k7le_
E:
1d
d1k7lg_
G:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1k7lA00 (A:202-468)
1b: CATH_1k7lC00 (C:202-468)
1c: CATH_1k7lE00 (E:202-468)
1d: CATH_1k7lG00 (G:202-468)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1k7lA00
A:202-468
1b
1k7lC00
C:202-468
1c
1k7lE00
E:202-468
1d
1k7lG00
G:202-468
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1k7lG01 (G:241-450)
1b: PFAM_Hormone_recep_1k7lG02 (G:241-450)
1c: PFAM_Hormone_recep_1k7lG03 (G:241-450)
1d: PFAM_Hormone_recep_1k7lG04 (G:241-450)
2a: PFAM_SRC_1_1k7lH01 (H:685-697)
2b: PFAM_SRC_1_1k7lH02 (H:685-697)
2c: PFAM_SRC_1_1k7lH03 (H:685-697)
2d: PFAM_SRC_1_1k7lH04 (H:685-697)
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1k7lG01
G:241-450
1b
Hormone_recep-1k7lG02
G:241-450
1c
Hormone_recep-1k7lG03
G:241-450
1d
Hormone_recep-1k7lG04
G:241-450
Clan
:
no clan defined [family: SRC-1]
(47)
Family
:
SRC-1
(47)
Homo sapiens (Human)
(33)
2a
SRC-1-1k7lH01
H:685-697
2b
SRC-1-1k7lH02
H:685-697
2c
SRC-1-1k7lH03
H:685-697
2d
SRC-1-1k7lH04
H:685-697
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Asymmetric Unit 1
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Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
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